Browse Element(s) Details


OsAffx.30088.2.S1_at

Description tigr:9637.m02657
TID=OsAffx.30088.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2985010/11expressed protein
LOC_Os09g301201/11cellulose synthase-like protein CslE, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29830Os.38400.1.S1_at11/119+18140490..18143512BHLH transcription factor, putative, expressed
LOC_Os09g29840Os.21292.1.S1_at11/119+18149617..18154454Hsp90 protein, expressed
LOC_Os09g29850OsAffx.30088.2.S1_at10/119+18155178..18157500expressed protein
LOC_Os09g29860NANA9+18158819..18159112hypothetical protein
LOC_Os09g29870OsAffx.6445.1.S1_at11/119+18162203..18163292hypothetical protein
LOC_Os09g29880OsAffx.30089.1.S1_at10/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.38764.1.S1_x_at2/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.48015.1.A1_x_at2/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.23189.1.S1_at1/119+18166830..18169831hypothetical protein
LOC_Os09g29890Os.52374.1.S1_a_at11/119+18173554..18177934phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os09g29900OsAffx.28000.1.S1_at11/119+18179315..18180100hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30088.2.S1_at--64--8851Chr09:18155794..18155818 (25 bp)
TGATCAGTACTCAGTACACGGCTGT
LOC_Os09g29850
OsAffx.30088.2.S1_at--463--2931NONE
AAGGCAGTTCTTGGCCAGGCAAGAG
NONE
OsAffx.30088.2.S1_at--1132--8111Chr09:18156676..18156700 (25 bp)
GGAAAACAAACTCAGGGTGGCAAGA
LOC_Os09g29850
OsAffx.30088.2.S1_at--288--2471Chr09:18156705..18156729 (25 bp)
AACAAACTCAGCCTGAGCTCCAGGC
LOC_Os09g29850
OsAffx.30088.2.S1_at--121--1592Chr09:18156720..18156744 (25 bp)
AGCTCCAGGCGCAGTATCGCTAAGA
LOC_Os09g29850
OsAffx.30088.2.S1_at--318--4591Chr09:18157286..18157310 (25 bp)
GCGCACGGCCGCATGTGGTGAGCAA
LOC_Os09g29850
OsAffx.30088.2.S1_at--1058--3931Chr09:18157335..18157359 (25 bp)
CGGCTGGACATCTGGTGCCCAGGTC
LOC_Os09g29850
OsAffx.30088.2.S1_at--417--9171Chr09:18157350..18157374 (25 bp)
TGCCCAGGTCCCGAAAGCTTGTGTT
LOC_Os09g29850
OsAffx.30088.2.S1_at--77--2351Chr09:18157363..18157387 (25 bp)
AAAGCTTGTGTTCCCGACGTTGCTG
LOC_Os09g29850
OsAffx.30088.2.S1_at--644--8271Chr09:18157438..18157462 (25 bp)
GGCATAGCTCCAGTTTGTGCTTCGG
LOC_Os09g29850
OsAffx.30088.2.S1_at--544--9231Chr09:18157446..18157470 (25 bp)
TCCAGTTTGTGCTTCGGTCGCGCCG
LOC_Os09g29850
Target Sequence 
TGATCAGTACTCAGTACACGGCTGTTGCTCTCCTCGCTTGCTGCGGGCGGCTGAAGAAGGCAGTTCTTGGCCAGGCAAGA
GGAAAACAAACTCAGGGTGGCAAGAGGAAAACAAACTCAGCCTGAGCTCCAGGCGCAGTATCGCTAAGAAGAAGAGGGCG
TCGTCGTCGCGCGAAGACCCCCACCGCCGCCGCTTTTGCCTCCGACGCCGGCGTGGCTCGCGCGCACGGCCGCATGTGGT
GAGCAAGGCAAAGGTGCCGGTGCGGCGGTGCGGCTGGACATCTGGTGCCCAGGTCCCGAAAGCTTGTGTTCCCGACGTTG
CTGGCGGAGGCGTCGGATTACATTGCGGCACTGGAGATGCTGGTGCGCTCCATGGCATAGCTCCAGTTTGTGCTTCGGTC
GCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30088.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis