Browse Element(s) Details


OsAffx.30092.1.S1_at

Description tigr:9637.m02673
TID=OsAffx.30092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3000011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29950Os.54107.1.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.2.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.1.S1_x_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29960OsAffx.6446.1.S1_at11/119+18233923..18234868Dof domain, zinc finger family protein, expressed
LOC_Os09g29970Os.11662.1.S1_at11/119+18236699..18239535TMV-MP30 binding protein 2C, putative, expressed
LOC_Os09g29980Os.21903.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29980Os.33600.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29990OsAffx.17967.1.S1_at11/119+18247970..18248731hypothetical protein
LOC_Os09g30000OsAffx.30092.1.S1_at11/119+18251434..18253020hypothetical protein
LOC_Os09g30010Os.56233.1.S1_s_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30010OsAffx.30093.1.S1_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30020NANA9+18261290..18266894retrotransposon protein, putative, unclassified
LOC_Os09g30030Os.12779.1.S1_at2/119+18268252..18268497expressed protein
LOC_Os09g30040NANA9+18271767..18271991expressed protein
LOC_Os09g30050NANA9+18274149..18274718expressed protein
LOC_Os09g30060Os.50081.1.S1_x_at1/119+18277828..18278633hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30092.1.S1_at--217--4931Chr09:18251671..18251695 (25 bp)
GCTTGCATCTATAGCCCGCATCTGT
LOC_Os09g30000
OsAffx.30092.1.S1_at--289--9151Chr09:18251708..18251732 (25 bp)
TGCGAAGGACAAAGGCGACGCCGAT
LOC_Os09g30000
OsAffx.30092.1.S1_at--220--811Chr09:18251744..18251768 (25 bp)
ATGGGAGCAAGGTTGCCGCCCACCT
LOC_Os09g30000
OsAffx.30092.1.S1_at--327--8411Chr09:18251845..18251869 (25 bp)
GGCCGACGGCCTACCTCACTGAAGA
LOC_Os09g30000
OsAffx.30092.1.S1_at--1021--6011Chr09:18252845..18252866 (22 bp)
GAGAGTTCACCGAACATGTTCTACA
LOC_Os09g30000
OsAffx.30092.1.S1_at--376--4111Chr09:18252852..18252876 (25 bp)
CGAACATGTTCTACAGACACCTGAA
LOC_Os09g30000
OsAffx.30092.1.S1_at--833--5631Chr09:18252867..18252891 (25 bp)
GACACCTGAACAGCAAAATCGGCAG
LOC_Os09g30000
OsAffx.30092.1.S1_at--3--1051Chr09:18252890..18252914 (25 bp)
AGGTGCTGAGCCCTGATCTGCCCGT
LOC_Os09g30000
OsAffx.30092.1.S1_at--100--10511Chr09:18252917..18252941 (25 bp)
TTCACGTCAACATGCCACCGTCGGG
LOC_Os09g30000
OsAffx.30092.1.S1_at--252--3371Chr09:18252932..18252956 (25 bp)
CACCGTCGGGCGTCAGAGATGCAGA
LOC_Os09g30000
OsAffx.30092.1.S1_at--749--1351Chr09:18252946..18252970 (25 bp)
AGAGATGCAGATGCCACGCCGGCTA
LOC_Os09g30000
Target Sequence 
GCTTGCATCTATAGCCCGCATCTGTCGGGGAAATCGCTGCGAAGGACAAAGGCGACGCCGATGGCGCACGCGAATGGGAG
CAAGGTTGCCGCCCACCTCACTCGCCTTCTCCACCGTTCTCCTCGCCGCCCCGTCGCGCTCGCCCGCCGCGGGCCTGCCG
CCGTTCCGCCCGCCGGCCGACGGCCTACCTCACTGAAGAAGAAGAGAAGAGAGTTCACCGAACATGTTCTACAGACACCT
GAACAGCAAAATCGGCAGGTGCTGAGCCCTGATCTGCCCGTCCTTCACGTCAACATGCCACCGTCGGGCGTCAGAGATGC
AGATGCCACGCCGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis