Browse Element(s) Details


OsAffx.30110.1.S1_at

Description tigr:9637.m02789
TID=OsAffx.30110.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to SBP-domain protein 5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3143411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31410OsAffx.17976.1.S1_at11/119+18888723..18892801Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31420OsAffx.17977.1.S1_at11/119+18901783..18902564hypothetical protein
LOC_Os09g31430Os.11510.1.S1_s_at11/119+18904347..18907425Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31430Os.11510.1.S1_at11/119+18904347..18907425Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31434OsAffx.30110.1.S1_at11/119+18916298..18917041hypothetical protein
LOC_Os09g31438OsAffx.2442.1.S1_x_at1/119+18917534..18920656SBP-domain protein 5, putative, expressed
LOC_Os09g31442OsAffx.27239.2.S1_at11/119+18936373..18937979hypothetical protein
LOC_Os09g31442Os.57198.1.S1_at1/119+18936373..18937979hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30110.1.S1_at--48--3991Chr09:18916754..18916778 (25 bp)
CGGTGGCAACGAAGACGCGGGCGGC
LOC_Os09g31434
OsAffx.30110.1.S1_at--1089--4971Chr09:18916674..18916698 (25 bp)
GCATCGACGCCACCGTGGATGAGAT
LOC_Os09g31434
OsAffx.30110.1.S1_at--910--1811Chr09:18916668..18916692 (25 bp)
ACGCCACCGTGGATGAGATCCGCGA
LOC_Os09g31434
OsAffx.30110.1.S1_at--17--4371Chr09:18916665..18916689 (25 bp)
CCACCGTGGATGAGATCCGCGAGGC
LOC_Os09g31434
OsAffx.30110.1.S1_at--730--7331Chr09:18916507..18916531 (25 bp)
GTGCAGTCGGCGCTGGCCGCGCAGG
LOC_Os09g31434
OsAffx.30110.1.S1_at--936--7771Chr09:18916464..18916488 (25 bp)
GGTGCGGGTCCAACTTCTGCGTCGT
LOC_Os09g31434
OsAffx.30110.1.S1_at--654--9131Chr09:18916462..18916486 (25 bp)
TGCGGGTCCAACTTCTGCGTCGTGC
LOC_Os09g31434
OsAffx.30110.1.S1_at--1066--2511Chr09:18916453..18916477 (25 bp)
AACTTCTGCGTCGTGCCCGTGGTGG
LOC_Os09g31434
OsAffx.30110.1.S1_at--382--7291Chr09:18916441..18916465 (25 bp)
GTGCCCGTGGTGGAATCCACCAACG
LOC_Os09g31434
OsAffx.30110.1.S1_at--281--2571Chr09:18916420..18916444 (25 bp)
AACGTCTCGGGCGAACAGTGCGTTC
LOC_Os09g31434
OsAffx.30110.1.S1_at--882--9471Chr09:18916416..18916440 (25 bp)
TCTCGGGCGAACAGTGCGTTCGCTG
LOC_Os09g31434
Target Sequence 
CGGTGGCAACGAAGACGCGGGCGGCGAGGGCTCGTCGTGGGCGCCGTGGACCGGGGTGGACGCGACGCCGCTCCGGCACG
GCATCGACGCCACCGTGGATGAGATCCGCGAGGCGCTGGGGCTGGCGCCCGTGTCGGCCGCCATGGCGCGCCGCCGACGC
GCGGCGGAGCACCTGCGCCGCGCCGCGGAGTACGTGGAGCTGCGCGCGCGCGGGGGTTGCCACCACGACGACGCGCGGTG
CCGCCGGGTGCAGTCGGCGCTGGCCGCGCAGGTGCGCGGCGCGTGCGCGCGGTGCGGGTCCAACTTCTGCGTCGTGCCCG
TGGTGGAATCCACCAACGTCTCGGGCGAACAGTGCGTTCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis