Browse Element(s) Details


OsAffx.30126.2.S1_x_at

Description tigr:9637.m01290
TID=OsAffx.30126.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MIL23.20
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1558010/11hypothetical protein
LOC_Os09g336302/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15510OsAffx.29854.1.S1_x_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510OsAffx.29854.1.S1_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510Os.28000.1.A1_x_at4/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15520Os.6617.1.S1_s_at11/119+9495345..9496052Oleosin family protein, expressed
LOC_Os09g15530OsAffx.29855.1.S1_at11/119+9496190..9497538hypothetical protein
LOC_Os09g15540Os.56211.1.S1_at11/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15540OsAffx.9167.1.S1_x_at1/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15550Os.56250.1.S1_at11/119+9500360..9501868F-box domain containing protein, expressed
LOC_Os09g15560Os.55706.1.S1_at11/119+9504693..9506076F-box domain containing protein, expressed
LOC_Os09g15570OsAffx.29856.1.S1_at11/119+9510313..9512124F-box domain containing protein, expressed
LOC_Os09g15580OsAffx.30126.2.S1_at11/119+9513235..9516346hypothetical protein
LOC_Os09g15580OsAffx.30126.2.S1_x_at10/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.16896.1.S1_at5/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.36979.1.S1_x_at3/119+9513235..9516346hypothetical protein
LOC_Os09g15590OsAffx.30125.1.S1_at11/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15590OsAffx.8513.1.S1_s_at1/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15600OsAffx.13016.2.S1_at10/119+9525904..9527944transposon protein, putative, unclassified
LOC_Os09g15610Os.14491.2.S1_x_at4/119+9529692..9532617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15610Os.47463.1.S1_x_at4/119+9529692..9532617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15620NANA9+9532863..9534256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15630Os.27037.1.A1_at1/119+9535282..9538504transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30126.2.S1_x_at--1157--5872Chr09:19861364..19861388 (25 bp)
GAGCTGATCAGGAGGTACAACCCCG
NONE
OsAffx.30126.2.S1_x_at--1013--7411NONE
GTGTTCATCCCGGTGAAAGATCCAA
NONE
OsAffx.30126.2.S1_x_at--882--5332Chr09:19862159..19862183 (25 bp)
GAAGTTACCACCCTCTGAAATCAGG
NONE
OsAffx.30126.2.S1_x_at--723--3472Chr09:19862261..19862282 (22 bp)
CAGGTGTAGGCATTGTTCTTCTCTT
NONE
OsAffx.30126.2.S1_x_at--779--9572Chr09:19862279..19862303 (25 bp)
TCTTCTGTGAGCTCTTGTGTATCTA
NONE
OsAffx.30126.2.S1_x_at--1072--3691Chr09:9513667..9513911 (25 bp)
CTATGCTAAGTTTGAGGAGGCCCTC
LOC_Os09g15580
OsAffx.30126.2.S1_x_at--846--2371Chr09:9513634..9513658 (25 bp)
AAACCCCACGGAAGCTCTTGATGAA
LOC_Os09g15580
OsAffx.30126.2.S1_x_at--567--671Chr09:9513614..9513638 (25 bp)
ATGAACTGATCGATCCAAGCCTGCG
LOC_Os09g15580
OsAffx.30126.2.S1_x_at--623--6292Chr09:19865524..19865548 (25 bp)
GATGAGGCCTACCATGAGATCCGTC
LOC_Os09g33630
OsAffx.30126.2.S1_x_at--1145--2472Chr09:19865576..19865600 (25 bp)
AACACCGATCTTCGCGACATGGACT
LOC_Os09g33630
OsAffx.30126.2.S1_x_at--597--371Chr09:9513337..9513358 (22 bp)
CTACCACCCTTTCTTAGGACAGTGA
LOC_Os09g15580
Target Sequence 
GAGCTGATCAGGAGGTACAACCCCGGGATGGGAGGGGTCTCCGGGAAGGGGATTGTGTTCATCCCGGTGAAAGATCCAAA
TGGAAGTTACCACCCTCTGAAATCAGGTGTAGGCATTGTTCTTCTCTTCTGTGAGCTCTTGTGTATCTATGCTAAGTTTG
AGGAGGCCCTCAGCGCTCCAAACCCCACGGAAGCTCTTGATGAACTGATCGATCCAAGCCTGCGAGGGGACTACCCCGTC
GACTCGGCTCTCACGATTGCGTCCCTTGCAAAGTCCTGCACGCATGAGGAGCCCGGGATGAGGCCTACCATGAGATCCGT
CGTCGTTGCCCTGATGGCGCTCACAGCCAACACCGATCTTCGCGACATGGACTACCTACCACCCTTTCTTAGGACAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30126.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis