Browse Element(s) Details


OsAffx.30187.4.S1_at

Description tigr:9632.m04234
TID=OsAffx.30187.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4414011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44050OsAffx.14262.1.S1_at11/114+25878628..25879919expressed protein
LOC_Os04g44060Os.5916.1.S1_s_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060OsAffx.24678.1.S1_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060Os.31191.2.S1_x_at1/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44070Os.53205.1.S1_at11/114+25884676..25886798expressed protein
LOC_Os04g44080NANA4+25887401..25887986hypothetical protein
LOC_Os04g44090Os.54162.1.S1_at11/114+25889081..25892266expressed protein
LOC_Os04g44100Os.53622.1.S1_at11/114+25892608..25894832expressed protein
LOC_Os04g44110Os.16890.1.S1_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44110Os.16890.1.S2_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44120NANA4+25899417..25899785expressed protein
LOC_Os04g44130OsAffx.26451.1.S1_at11/114+25901343..25901703Gamma-thionins family protein
LOC_Os04g44140OsAffx.30187.4.S1_at11/114+25903166..25903624hypothetical protein
LOC_Os04g44150Os.54940.1.S1_at11/114+25911629..25915274oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g44160OsAffx.26452.1.S1_at11/114+25919936..25920142hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30187.4.S1_at--416--3791Chr04:25903427..25903451 (25 bp)
CTCGTCGCCTTGCTTTCATGCAGAC
LOC_Os04g44140
OsAffx.30187.4.S1_at--1026--9311Chr04:25903431..25903455 (25 bp)
TCGCCTTGCTTTCATGCAGACCATC
LOC_Os04g44140
OsAffx.30187.4.S1_at--250--4171Chr04:25903432..25903456 (25 bp)
CGCCTTGCTTTCATGCAGACCATCG
LOC_Os04g44140
OsAffx.30187.4.S1_at--334--4431Chr04:25903433..25903457 (25 bp)
GCCTTGCTTTCATGCAGACCATCGT
LOC_Os04g44140
OsAffx.30187.4.S1_at--1056--3611Chr04:25903435..25903459 (25 bp)
CTTGCTTTCATGCAGACCATCGTCC
LOC_Os04g44140
OsAffx.30187.4.S1_at--299--10731Chr04:25903436..25903460 (25 bp)
TTGCTTTCATGCAGACCATCGTCCC
LOC_Os04g44140
OsAffx.30187.4.S1_at--452--4891Chr04:25903438..25903462 (25 bp)
GCTTTCATGCAGACCATCGTCCCAG
LOC_Os04g44140
OsAffx.30187.4.S1_at--620--10311Chr04:25903440..25903464 (25 bp)
TTTCATGCAGACCATCGTCCCAGCG
LOC_Os04g44140
OsAffx.30187.4.S1_at--631--651Chr04:25903444..25903468 (25 bp)
ATGCAGACCATCGTCCCAGCGCACG
LOC_Os04g44140
OsAffx.30187.4.S1_at--502--1731Chr04:25903450..25903474 (25 bp)
ACCATCGTCCCAGCGCACGCGGAGG
LOC_Os04g44140
OsAffx.30187.4.S1_at--190--4111Chr04:25903497..25903521 (25 bp)
CGACACGGATAGTGGCGTCGAAGAA
LOC_Os04g44140
Target Sequence 
CTCGTCGCCTTGCTTTCATGCAGACCATCGTCCCAGCGCACGCGGAGGGTGTCTGGGTGCTCGGCGGCGGCGACACGGAT
AGTGGCGTCGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30187.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis