Browse Element(s) Details


OsAffx.30206.1.S1_at

Description tigr:9637.m03366
TID=OsAffx.30206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3934010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39320OsAffx.30205.1.S1_at11/119+22598493..22607817CTR1-like protein kinase, putative, expressed
LOC_Os09g39330OsAffx.18057.1.S1_at11/119+22609915..22619148retrotransposon protein, putative, unclassified, expressed
LOC_Os09g39334Os.53474.1.S1_at10/119+22622263..22623247expressed protein
LOC_Os09g39340OsAffx.30206.1.S1_at10/119+22624664..22627016hypothetical protein
LOC_Os09g39350Os.12214.1.S1_at11/119+22630629..22633014expressed protein
LOC_Os09g39360Os.52790.1.S1_at11/119+22634997..22637833expressed protein
LOC_Os09g39370OsAffx.30207.1.S1_at11/119+22638131..22640118hypothetical protein
LOC_Os09g39380Os.6239.1.S1_at8/119+22644422..22648010Monodehydroascorbate reductase, putative, expressed
LOC_Os09g39390Os.6765.1.S1_a_at11/119+22648606..22651602oxidoreductase, aldo/keto reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30206.1.S1_at--466--8551Chr09:22624702..22624726 (25 bp)
TGGAGTTGCCATGGACAGCGACCAA
LOC_Os09g39340
OsAffx.30206.1.S1_at--206--8351Chr09:22624751..22624820 (25 bp)
GGCTGGTGGCTTTGCAAATCTATTC
LOC_Os09g39340
OsAffx.30206.1.S1_at--357--2271Chr09:22624811..22624835 (25 bp)
AAATCTATTCACGTCTTGACAGCCC
LOC_Os09g39340
OsAffx.30206.1.S1_at--1079--1231Chr09:22624860..22624884 (25 bp)
AGTTGCTGCTGTTTGTCTGCCAAAA
LOC_Os09g39340
OsAffx.30206.1.S1_at--197--2591Chr09:22624883..22624907 (25 bp)
AACGAGTTGAATGCTCCTGTTGCGC
LOC_Os09g39340
OsAffx.30206.1.S1_at--639--4791Chr09:22624895..22624919 (25 bp)
GCTCCTGTTGCGCTAGGTAGAGAAC
LOC_Os09g39340
OsAffx.30206.1.S1_at--366--5451Chr09:22624916..22624940 (25 bp)
GAACGATCGGATACAGGGCATCCAG
LOC_Os09g39340
OsAffx.30206.1.S1_at--221--2211Chr09:22626045..22626069 (25 bp)
ACAACAGTGATTTCTCTGTCTCACC
LOC_Os09g39340
OsAffx.30206.1.S1_at--336--7831Chr09:22626087..22626111 (25 bp)
GGTAATCTGAACTTAGCGGTCACCA
LOC_Os09g39340
OsAffx.30206.1.S1_at--236--4671NONE
GCGGTCACCAGAGGCTTTTACCTTA
NONE
OsAffx.30206.1.S1_at--196--1994Chr09:22626940..22626964 (25 bp)
ACTCTGTTAACAGGACTCGTAATGG
LOC_Os09g39340
Target Sequence 
TGGAGTTGCCATGGACAGCGACCAACACGGGAGAGATGGTAGTGACAATGGCTGGTGGCTTTGCAAATCTATTCACGTCT
TGACAGCCCTTGCGCACCAGCGCACGCCTGTGCAGTTGCTGCTGTTTGTCTGCCAAAACGAGTTGAATGCTCCTGTTGCG
CTAGGTAGAGAACGATCGGATACAGGGCATCCAGAGCAGTGGACAGTGGAGTTGATAGTGGTAAACACAACAGTGATTTC
TCTGTCTCACCCAAGAGGTAATCACAGGGGTAATCTGAACTTAGCGGTCACCAGAGGCTTTTACCTTAACTTTGTTCAGA
ATATAATGGAGAACTCTGTTAACAGGACTCGTAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis