Browse Element(s) Details


OsAffx.30232.1.S1_at

Description gb:NM_194527.1
DB_XREF= gi:37530413
TID=OsAffx.30232.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative hsr201 hypersensitivity-related protein (OSJNBa0065H03.9), mRNA.
PROD=putative hsr201 hypersensitivity-relatedprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g017209/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01670OsAffx.18072.1.S1_at10/1110+428685..429710hypothetical protein
LOC_Os10g01680OsAffx.30232.2.S1_at11/1110+432817..437107Transferase family protein
LOC_Os10g01680OsAffx.30232.3.S1_x_at2/1110+432817..437107Transferase family protein
LOC_Os10g01690OsAffx.30232.3.S1_x_at11/1110+440134..441438Transferase family protein
LOC_Os10g01700OsAffx.18075.1.S1_x_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.18075.1.S1_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.3.S1_x_at3/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.1.S1_x_at1/1110+442877..444712expressed protein
LOC_Os10g01710OsAffx.30231.1.S1_at11/1110+445415..445923hypothetical protein
LOC_Os10g01720OsAffx.30232.1.S1_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.1.S1_x_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.3.S1_x_at5/1110+452712..456562Transferase family protein
LOC_Os10g01730OsAffx.18076.1.S1_at11/1110+458063..460201hypothetical protein
LOC_Os10g01740NANA10+461662..462058hypothetical protein
LOC_Os10g01750OsAffx.437.1.S1_x_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01750OsAffx.437.1.S1_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01760OsAffx.30233.1.S1_at11/1110+473086..473619Peroxidase 53 precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30232.1.S1_at--624--3871Chr10:453990..454014 (25 bp)
CTGTTGCCGCCTTCGGTGATGGAGA
LOC_Os10g01720
OsAffx.30232.1.S1_at--1135--1831Chr10:456401..456425 (25 bp)
ACGAACGAGTTCATCACGGTGTTGC
LOC_Os10g01720
OsAffx.30232.1.S1_at--449--2591Chr10:456404..456428 (25 bp)
AACGAGTTCATCACGGTGTTGCCAG
LOC_Os10g01720
OsAffx.30232.1.S1_at--987--1211Chr10:456408..456432 (25 bp)
AGTTCATCACGGTGTTGCCAGTCTT
LOC_Os10g01720
OsAffx.30232.1.S1_at--170--3571Chr10:456412..456436 (25 bp)
CATCACGGTGTTGCCAGTCTTCATG
LOC_Os10g01720
OsAffx.30232.1.S1_at--104--2211Chr10:456483..456507 (25 bp)
ACAAGCCAAAGTACCAGTGCAGTAC
LOC_Os10g01720
OsAffx.30232.1.S1_at--622--1691Chr10:456486..456510 (25 bp)
AGCCAAAGTACCAGTGCAGTACGGC
LOC_Os10g01720
OsAffx.30232.1.S1_at--379--1131Chr10:456498..456522 (25 bp)
AGTGCAGTACGGCTGCGCCTGCGTC
LOC_Os10g01720
OsAffx.30232.1.S1_at--999--5791Chr10:456531..456555 (25 bp)
GACGCTGGACCAGCTGGTTGGCAGC
LOC_Os10g01720
OsAffx.30232.1.S1_at--726--6611Chr10:456547..456571 (25 bp)
GTTGGCAGCTGCCTGATCCCGAGCC
NONE
OsAffx.30232.1.S1_at--1002--8471Chr10:456580..456604 (25 bp)
TGGCTGACCCTGTTCCGGCCAGGTC
NONE
Target Sequence 
CTGTTGCCGCCTTCGGTGATGGAGAGGTTTGCAGAGGAGCTTGCTGGGCTGATGATGAGCAAGGAGGAATATGAAGACGA
ACGAGTTCATCACGGTGTTGCCAGTCTTCATGNNNNNNNNNNNNNNNNNNNNNNNNNGGATGCTCAACCACGAGCTCAAC
AAGCCAAAGTACCAGTGCAGTACGGCTGCGCCTGCGTCGAGCACTCGACGCTGGACCAGCTGGTTGGCAGCTGCCTGATC
CCGAGCCCGACGCCCTGGCTGACCCTGTTCCGGCCAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis