Browse Element(s) Details


OsAffx.3025.1.S1_at

Description tigr:9630.m04923
TID=OsAffx.3025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5025011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50220OsAffx.24807.1.S1_at10/112+30655447..30658484expressed protein
LOC_Os02g50220Os.50196.2.S1_x_at1/112+30655447..30658484expressed protein
LOC_Os02g50230Os.39981.1.S1_at11/112+30663348..30667188Peptidase family M48 containing protein, expressed
LOC_Os02g50240Os.7909.1.S1_at11/112+30668911..30672790Glutamine synthetase root isozyme 3, putative, expressed
LOC_Os02g50250OsAffx.3025.1.S1_at11/112+30679458..30680309hypothetical protein
LOC_Os02g50260OsAffx.19972.1.S1_at3/112+30685344..30687619transposon protein, putative, unclassified
LOC_Os02g50260Os.38172.1.S1_x_at2/112+30685344..30687619transposon protein, putative, unclassified
LOC_Os02g50270Os.18106.1.S1_at11/112+30689482..30692532ankyrin repeat family protein, putative, expressed
LOC_Os02g50280Os.52130.1.S1_at11/112+30693189..30695272pentatricopeptide, putative, expressed
LOC_Os02g50290Os.49154.1.S1_at11/112+30696095..30697767Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g50300NANA2+30699155..30699565expressed protein
LOC_Os02g50310NANA2+30700973..30702611BED zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3025.1.S1_at--881--9071Chr02:30679753..30679777 (25 bp)
TGCTCCGGAAGCACGCCGCGTGGAC
LOC_Os02g50250
OsAffx.3025.1.S1_at--1152--951Chr02:30679837..30679861 (25 bp)
AGGACCTCAGGAGCCTCGCGGCTAG
LOC_Os02g50250
OsAffx.3025.1.S1_at--824--6211Chr02:30679861..30679885 (25 bp)
GAGGCGGCCTCGTCAATCCGAGGAT
LOC_Os02g50250
OsAffx.3025.1.S1_at--21--8091Chr02:30679889..30679913 (25 bp)
GGAGCTGATCGCCTCCGTAAGCGAC
LOC_Os02g50250
OsAffx.3025.1.S1_at--654--10631Chr02:30679949..30679973 (25 bp)
TTCGCCCGCGCAGTTGGCCGAGGTA
LOC_Os02g50250
OsAffx.3025.1.S1_at--816--1071Chr02:30680010..30680034 (25 bp)
AGGGCCATCCTGTTGAAGGTGAAGC
LOC_Os02g50250
OsAffx.3025.1.S1_at--786--2131Chr02:30680123..30680147 (25 bp)
ACAGCTTGCGGCAGCCCGAGCGTTC
LOC_Os02g50250
OsAffx.3025.1.S1_at--539--10691Chr02:30680157..30680181 (25 bp)
TTGCGCCGCTTCAGGGCTTTATCTG
LOC_Os02g50250
OsAffx.3025.1.S1_at--1138--1071Chr02:30680169..30680193 (25 bp)
AGGGCTTTATCTGCAGACGCTAACA
LOC_Os02g50250
OsAffx.3025.1.S1_at--634--9471Chr02:30680178..30680202 (25 bp)
TCTGCAGACGCTAACAGCAACCCAA
LOC_Os02g50250
OsAffx.3025.1.S1_at--1059--1391Chr02:30680236..30680260 (25 bp)
AGACGGAGGACGATCTTGCAGCGCC
LOC_Os02g50250
Target Sequence 
TGCTCCGGAAGCACGCCGCGTGGACCGACGCGCGCCGCGCGGAGGCGGCGGGCATCGCCTCGGCCGCGCGCCGCCTGCGG
GAGAAGGACCTCAGGAGCCTCGCGGCTAGAGGCGGCCTCGTCAATCCGAGGATGGCGGAGCTGATCGCCTCCGTAAGCGA
CGCCATGGAGTCCGACGTCCGGCACGGCCACGTCCCTTCGCCCGCGCAGTTGGCCGAGGTAGAGAGGCTCGAGGGCCGCG
TCGCCGTCGCCTCGGTCAGGGCCATCCTGTTGAAGGTGAAGCTCACGCGGGGCGCGGCCGCGTTCGCGGGGAGGCCCGGC
GAGGAGGCGCTCGCGCAGGCGCTGCGCGGGCACGCCGCGGCCGCGGAGGCACAGCTTGCGGCAGCCCGAGCGTTCGCCGG
AGCCTTGCGCCGCTTCAGGGCTTTATCTGCAGACGCTAACAGCAACCCAACAGCAACTCGAGTGCACAAGCGGCCGTCGC
CGGAGACGGAGGACGATCTTGCAGCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis