Browse Element(s) Details


OsAffx.30261.1.S1_at

Description tigr:9638.m00278
TID=OsAffx.30261.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g037108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03680OsAffx.18112.1.S1_at10/1110+1631136..1634213hypothetical protein
LOC_Os10g03690Os.8362.2.S1_x_at10/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03690Os.8362.1.S1_at9/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03700OsAffx.19421.1.S1_at2/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03700Os.46058.2.S1_x_at1/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03710OsAffx.30261.2.S1_s_at11/1110+1656435..1659338hypothetical protein
LOC_Os10g03710OsAffx.30261.1.S1_at8/1110+1656435..1659338hypothetical protein
LOC_Os10g03720OsAffx.20772.1.S1_at11/1110+1662167..1662628hypothetical protein
LOC_Os10g03730Os.46555.1.S1_x_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46555.1.S1_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.2.S1_x_at5/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.1.S1_at1/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.4.S1_x_at11/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.1.S1_at11/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.2.S1_at3/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03750Os.46058.2.S1_x_at11/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03750Os.46058.1.S1_at11/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03750Os.46555.1.S1_x_at2/1110+1679068..1681989F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30261.1.S1_at--407--2211NONE
ACAAGCGGGAAGTTCCAGGCCTCGG
NONE
OsAffx.30261.1.S1_at--571--331Chr10:1657506..1657530 (25 bp)
ATACACGAACATCCAAATTCACATT
LOC_Os10g03710
OsAffx.30261.1.S1_at--161--2251Chr10:1657520..1657544 (25 bp)
AAATTCACATTTGGGCCAGATGTGG
LOC_Os10g03710
OsAffx.30261.1.S1_at--643--3433Chr10:1657536..1657560 (25 bp)
CAGATGTGGGAATTGATCCAGGCGT
LOC_Os10g03710
OsAffx.30261.1.S1_at--979--4911NONE
GCATTCCACGGAAGGATGGTTGACT
NONE
OsAffx.30261.1.S1_at--1130--3331NONE
CACGGAAGGATGGTTGACTCCAACA
NONE
OsAffx.30261.1.S1_at--38--2431Chr10:1659114..1659138 (25 bp)
AAAACTGGAGGATCCCCTGCAGGGA
LOC_Os10g03710
OsAffx.30261.1.S1_at--230--6171Chr10:1659121..1659145 (25 bp)
GAGGATCCCCTGCAGGGACTTCGAA
LOC_Os10g03710
OsAffx.30261.1.S1_at--1130--4271Chr10:1659129..1659153 (25 bp)
CCTGCAGGGACTTCGAAGCAAACAT
LOC_Os10g03710
OsAffx.30261.1.S1_at--403--6031Chr10:1659165..1659189 (25 bp)
GAGATGGATGATCAGCTTGAACAAT
LOC_Os10g03710
OsAffx.30261.1.S1_at--57--8831Chr10:1659173..1659197 (25 bp)
TGATCAGCTTGAACAATTTACCAGC
LOC_Os10g03710
Target Sequence 
ACAAGCGGGAAGTTCCAGGCCTCGGGTGAGGATTATTCTCTCACCCGTGGGTCGGCATGGATCGAGCCGCAATACACAGC
AATACACGAACATCCAAATTCACATTTGGGCCAGATGTGGGAATTGATCCAGGCGTGGGCTGCATTCCACGGAAGGATGG
TTGACTCCAACAAAACTGGAGGATCCCCTGCAGGGACTTCGAAGCAAACATTATCTGCTGAAGAGATGGATGATCAGCTT
GAACAATTTACCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis