Browse Element(s) Details


OsAffx.30276.1.S1_at

Description tigr:9638.m00348
TID=OsAffx.30276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0439011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04342Os.51966.1.S1_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342OsAffx.30274.1.S1_x_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342OsAffx.30274.1.S1_at11/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342Os.11925.1.S1_at8/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04342Os.36453.1.S1_at1/1110+2028190..2041707disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04370Os.46492.1.S1_at11/1110+2043569..2044965F-box domain containing protein, expressed
LOC_Os10g04380OsAffx.30275.1.S1_at11/1110+2046641..2048152hypothetical protein
LOC_Os10g04390OsAffx.30276.1.S1_at11/1110+2057176..2060535hypothetical protein
LOC_Os10g04400OsAffx.18124.1.S1_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04400OsAffx.18124.1.S1_x_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04410OsAffx.18125.1.S1_at10/1110+2069274..2070969hypothetical protein
LOC_Os10g04429Os.46537.1.S1_at11/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04429OsAffx.18124.1.S1_x_at3/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04450OsAffx.18126.1.S1_at11/1110+2082437..2083870hypothetical protein
LOC_Os10g04460OsAffx.30277.1.S1_at10/1110+2085312..2085780hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30276.1.S1_at--1116--7511Chr10:2058764..2058788 (25 bp)
GTGGACGAGCTCCTGCAACCGCACG
LOC_Os10g04390
OsAffx.30276.1.S1_at--74--1111Chr10:2058628..2058652 (25 bp)
AGTGGGTAGAAGCTCACCAGCGCCT
LOC_Os10g04390
OsAffx.30276.1.S1_at--1043--9091Chr10:2058593..2058617 (25 bp)
TGCTCTGATGATACCCACCAGGTCA
LOC_Os10g04390
OsAffx.30276.1.S1_at--641--1931Chr10:2058515..2058539 (25 bp)
ACGGAAGAACTCGACTCCGGCGGTG
LOC_Os10g04390
OsAffx.30276.1.S1_at--902--9271Chr10:2058500..2058524 (25 bp)
TCCGGCGGTGTAGAACTGCAGTCCA
LOC_Os10g04390
OsAffx.30276.1.S1_at--225--771Chr10:2058463..2058487 (25 bp)
ATGTCGGAGAGGACCTTGTGCTCGT
LOC_Os10g04390
OsAffx.30276.1.S1_at--714--4451Chr10:2058406..2058430 (25 bp)
GCCTTTCGCCAGTGCGCGGTGAAGA
LOC_Os10g04390
OsAffx.30276.1.S1_at--895--7351Chr10:2058388..2058412 (25 bp)
GTGAAGATGGCCATTATAGCTTAAT
LOC_Os10g04390
OsAffx.30276.1.S1_at--690--6391Chr10:2058357..2058381 (25 bp)
GATCGATGGTATCCTTGCTTGTTGG
LOC_Os10g04390
OsAffx.30276.1.S1_at--205--6911Chr10:2058349..2058373 (25 bp)
GTATCCTTGCTTGTTGGGTGCCCAA
LOC_Os10g04390
OsAffx.30276.1.S1_at--410--1871Chr10:2058324..2058348 (25 bp)
ACGAGAAGAAGCTACGTCCCGTGTC
LOC_Os10g04390
Target Sequence 
GTGGACGAGCTCCTGCAACCGCACGTCGGCGTCGGCCTCCACGAAAACCACCCCTTCCGCCGTGCACTCCACAACCAGCT
TACCTCCTCCTCCTCCTCCACCTGCGACGACGGGGAGCTCCCGGAGGCGGCCGGCCAGTGGGTAGAAGCTCACCAGCGCC
TCCGCCAGCGCTGCTCTGATGATACCCACCAGGTCACCGCTATTGTCGTCGTCACCACCGGAGAAGACGGCCGCAGCGTG
ATGGCGGCGACGGAAGAACTCGACTCCGGCGGTGTAGAACTGCAGTCCACGCTGGGTGTCAATGTCGGAGAGGACCTTGT
GCTCGTGCGGGGTTGGCCTCGCCGGTGCCACGAGCTCCGCCTTTCGCCAGTGCGCGGTGAAGATGGCCATTATAGCTTAA
TTGAGATGATCGATGGTATCCTTGCTTGTTGGGTGCCCAAACGAGAAGAAGCTACGTCCCGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis