Browse Element(s) Details


OsAffx.3028.1.S1_at

Description tigr:9630.m04962
TID=OsAffx.3028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5064011/11HEAT repeat family protein, expressed
LOC_Os07g107001/11Polygalacturonase precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50610Os.31535.1.A1_at1/112+30898909..30903290hypothetical protein
LOC_Os02g50620Os.10143.1.S1_at11/112+30912914..30917073Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os02g50630Os.47376.1.A1_at11/112+30918595..30922045Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os02g50630Os.57060.1.S1_at1/112+30918595..30922045Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os02g50640Os.18057.1.A1_at11/112+30924204..30928422HEAT repeat family protein, expressed
LOC_Os02g50640OsAffx.3028.1.S1_at11/112+30924204..30928422HEAT repeat family protein, expressed
LOC_Os02g50650NANA2+30934489..30936206transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g50660NANA2+30937667..30942731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g50670NANA2+30948809..30949546hypothetical protein
LOC_Os02g50680Os.27853.1.S1_at11/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50680OsAffx.16376.1.S1_at1/112+30952740..30959353AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0007275biological_processdevelopment
GO:0009826biological_processunidimensional cell growth
GO:0010031biological_processcircumnutation
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0004650molecular_functionpolygalacturonase activity
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3028.1.S1_at--1131--2711Chr02:30926631..30926655 (25 bp)
AAGCAGGATCACGAGTCGTTCCATA
LOC_Os02g50640
OsAffx.3028.1.S1_at--418--1351Chr02:30926519..30926543 (25 bp)
AGAGATTCGGTCACAACTGCTTCAG
LOC_Os02g50640
OsAffx.3028.1.S1_at--871--5931Chr02:30926480..30926504 (25 bp)
GAGCAGTTTACTAGATCTTATCCAG
LOC_Os02g50640
OsAffx.3028.1.S1_at--481--2271Chr02:30925539..30925563 (25 bp)
AAATCTCCCGAGATTTAGCTGCCTC
LOC_Os02g50640
OsAffx.3028.1.S1_at--425--10451Chr02:30925525..30925549 (25 bp)
TTAGCTGCCTCGTCAGGAAGGACAT
LOC_Os02g50640
OsAffx.3028.1.S1_at--1119--5392Chr07:5810734..5811127 (25 bp)
GAAGCTCATGTCAACTCATGCTGCA
LOC_Os07g10700
OsAffx.3028.1.S1_at--575--3751Chr02:30925478..30925502 (25 bp)
CTCATGCTGCATTCTGAACCCAAAA
LOC_Os02g50640
OsAffx.3028.1.S1_at--476--111Chr02:30925454..30925478 (25 bp)
ATTCTGGAGGCGTCATGATGCTAGT
LOC_Os02g50640
OsAffx.3028.1.S1_at--888--10051Chr02:30925418..30925442 (25 bp)
TAGTTTTTCTGTCTCTGATGGTCGA
LOC_Os02g50640
OsAffx.3028.1.S1_at--9--10411Chr02:30925328..30925352 (25 bp)
TTTTGTCACCAACCCGTTAGCTGAG
LOC_Os02g50640
OsAffx.3028.1.S1_at--689--5871Chr02:30925306..30925330 (25 bp)
GAGCCGAACATTTCGTCTGCTGCGA
LOC_Os02g50640
Target Sequence 
AAGCAGGATCACGAGTCGTTCCATATGAGGAGGGTGGTAACATGGAAGAAATTTCTGAGATTGGTGGCGGATCAGAGAGG
TTTCAGACAGGTTACAAAGACGAGGGATTGTCAGAGATTCGGTCACAACTGCTTCAGATTGAAAATCAGCAGAGCAGTTT
ACTAGATCTTATCCAGAAATTTATGGGGAAATCTGAGAATGGCATGAATTCTTTGGAGACAAGGGTACATGGACTTGAGA
TGGCATTGGATGAAATCTCCCGAGATTTAGCTGCCTCGTCAGGAAGGACATCAAACAGCGAAGCTCATGTCAACTCATGC
TGCATTCTGAACCCAAAATTCTGGAGGCGTCATGATGCTAGTAGATACTCTTCTAGTTTTTCTGTCTCTGATGGTCGAAA
CAGTTCGGAGGGGAGCAGAACTTCTTACAAGTGGGGAAGGCAAAAGTTTGGAGTTCAGGGTGGTTTTGTCACCAACCCGT
TAGCTGAGCCGAACATTTCGTCTGCTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis