Browse Element(s) Details


OsAffx.30305.1.S1_at

Description tigr:9638.m00484
TID=OsAffx.30305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0572011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05700OsAffx.8864.1.S1_at11/1110+2858350..2858901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05710Os.46273.1.S1_at11/1110+2860114..2866525retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05730Os.18851.2.A1_at11/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05730Os.18851.1.A1_at10/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05720OsAffx.30305.1.S1_at11/1110+2869612..2870662Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g05740OsAffx.6586.1.S1_at11/1110+2878546..2880179hypothetical protein
LOC_Os10g05750Os.8203.1.S1_at11/1110+2881765..2883207proline-rich protein, putative, expressed
LOC_Os10g05770OsAffx.20747.1.S1_at10/1110+2889282..2892519hypothetical protein
LOC_Os10g05770OsAffx.14013.2.S1_at2/1110+2889282..2892519hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30305.1.S1_at--923--291Chr10:2869655..2869679 (25 bp)
ATACCAGGATGTCTCAGCTCAAGTC
LOC_Os10g05720
OsAffx.30305.1.S1_at--709--1571Chr10:2869670..2869694 (25 bp)
AGCTCAAGTCTTCTAGCCTGGCTGC
LOC_Os10g05720
OsAffx.30305.1.S1_at--448--3031Chr10:2869751..2869775 (25 bp)
AATGCCAGAACGATGTCGAGGTGCT
LOC_Os10g05720
OsAffx.30305.1.S1_at--282--2931Chr10:2869804..2869828 (25 bp)
AAGGACGGGCCGAAGCTGCAGCCAT
LOC_Os10g05720
OsAffx.30305.1.S1_at--38--4771Chr10:2869838..2869862 (25 bp)
GCTGCACCTCCATGAAGGGCGTCAA
LOC_Os10g05720
OsAffx.30305.1.S1_at--239--1651Chr10:2869891..2869915 (25 bp)
AGCCCAGGCGTCAGGGACAACATCA
LOC_Os10g05720
OsAffx.30305.1.S1_at--8--7431Chr10:2869927..2869951 (25 bp)
GTGTTCTATGTCACCAAGCAGTGTG
LOC_Os10g05720
OsAffx.30305.1.S1_at--399--5231Chr10:2869968..2870432 (25 bp)
GAACTGCGGAGGATCCAAGGTCTAA
LOC_Os10g05720
OsAffx.30305.1.S1_at--623--2931Chr10:2870474..2870498 (25 bp)
AAGGCACCTAGCAGTTGCACGGCTG
LOC_Os10g05720
OsAffx.30305.1.S1_at--611--7791Chr10:2870517..2870541 (25 bp)
GGTCAACTTTTAGAGTACACGGATT
LOC_Os10g05720
OsAffx.30305.1.S1_at--84--7931Chr10:2870537..2870561 (25 bp)
GGATTGTACGTCAACCTTCAGCATG
LOC_Os10g05720
Target Sequence 
ATACCAGGATGTCTCAGCTCAAGTCTTCTAGCCTGGCTGCACTGCTGATCTTCCTCCTGGCAGTGTTCACCACTGCAGCA
GCAGCGGCAGGTACAGAATGCCAGAACGATGTCGAGGTGCTGAAGACAACCTGCTACAAGTTCGTTGAGAAGGACGGGCC
GAAGCTGCAGCCATCACCTGACTGCTGCACCTCCATGAAGGGCGTCAACGTGCCCTGCGTCTGCACCTACCTGGGCAGCC
CAGGCGTCAGGGACAACATCAACATGGATAAGGTGTTCTATGTCACCAAGCAGTGTGGCATCGCCATCCCCGGGAACTGC
GGAGGATCCAAGGTCTAAAACAAGAACTGATTGACTTGGTGAAGTTGGCTGACAAAAGCAAGGCACCTAGCAGTTGCACG
GCTGATATAGGTAAATAATGTTGGTCAACTTTTAGAGTACACGGATTGTACGTCAACCTTCAGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis