Browse Element(s) Details


OsAffx.30311.1.S1_at

Description tigr:9638.m00521
TID=OsAffx.30311.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0608010/11hypothetical protein
LOC_Os03g615801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06030OsAffx.20742.3.S1_x_at11/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.20742.4.S1_x_at9/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.20742.2.S1_x_at8/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.29386.2.S1_at1/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06050Os.45161.1.A1_x_at1/1110+3057737..3060528retrotransposon protein, putative, unclassified
LOC_Os10g06070OsAffx.20604.2.S1_at11/1110+3064240..3066150retrotransposon protein, putative, unclassified
LOC_Os10g06080OsAffx.30311.1.S1_at10/1110+3068712..3069646hypothetical protein
LOC_Os10g06090OsAffx.20742.1.S1_at11/1110+3074744..3081593Protein kinase domain containing protein
LOC_Os10g06100OsAffx.20743.1.S1_at11/1110+3089631..3091177retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30311.1.S1_at--335--3412Chr02:340604..340654 (25 bp)
CAGCACCTATAATGCCGACGTATAT
NONE
OsAffx.30311.1.S1_at--748--10171Chr10:3069261..3069285 (25 bp)
TATAATGCCGACGTATATGTGTCCT
LOC_Os10g06080
OsAffx.30311.1.S1_at--1129--9751Chr10:3069259..3069283 (25 bp)
TAATGCCGACGTATATGTGTCCTTT
LOC_Os10g06080
OsAffx.30311.1.S1_at--1150--591Chr10:3069257..3069281 (25 bp)
ATGCCGACGTATATGTGTCCTTTTA
LOC_Os10g06080
OsAffx.30311.1.S1_at--536--4311NONE
CCTTTTAGTAGTGAGATATCAGAGT
NONE
OsAffx.30311.1.S1_at--694--1251Chr10:3068827..3068851 (25 bp)
AGATATCAGAGTCATACTCGGAGGG
LOC_Os10g06080
OsAffx.30311.1.S1_at--1015--351Chr10:3068801..3068825 (25 bp)
ATAAGGATGTTGTCATATCGTGTGG
LOC_Os10g06080
OsAffx.30311.1.S1_at--1145--7691Chr10:3068777..3068801 (25 bp)
GGGTCTGTTGTCTTCAAGTTCTACT
LOC_Os10g06080
OsAffx.30311.1.S1_at--803--7172Chr03:34860269..34860312 (24 bp)
GTCTGTTGTCTTCAAGTTCTACTTG
LOC_Os03g61580
OsAffx.30311.1.S1_at--499--8811Chr10:3068772..3068796 (25 bp)
TGTTGTCTTCAAGTTCTACTTGGAG
LOC_Os10g06080
OsAffx.30311.1.S1_at--633--3612Chr11:10007575..10007778 (25 bp)
CTTGGAGACCAAGATGATATGTGGT
NONE
Target Sequence 
CAGCACCTATAATGCCGACGTATATGTGTCCTTTTAGTAGTGAGATATCAGAGTCATACTCGGAGGGGATAAGGATGTTG
TCATATCGTGTGGGGTCTGTTGTCTTCAAGTTCTACTTGGAGACCAAGATGATATGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis