Browse Element(s) Details


OsAffx.3034.1.S1_at

Description tigr:9630.m05017
TID=OsAffx.3034.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5112011/11NAC-domain containing protein 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51100Os.23055.1.A1_at11/112+31246709..31250095anion-transporting ATPase family protein, putative, expressed
LOC_Os02g51110Os.7164.1.S1_at11/112+31260459..31264070MIP family channel proteins containing protein, expressed
LOC_Os02g51120OsAffx.3034.1.S1_at11/112+31274715..31277298NAC-domain containing protein 9, putative, expressed
LOC_Os02g51130Os.48353.1.S1_at10/112+31278853..31280690Glycosyl transferase family 8 protein, expressed
LOC_Os02g51140Os.14846.1.S1_at11/112+31284801..31293208expressed protein
LOC_Os02g51150Os.9619.1.S1_at11/112+31293730..31295959Protein SUR2, putative, expressed
LOC_Os02g51160OsAffx.24822.1.S1_at11/112+31297671..31300681expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3034.1.S1_at--81--9651Chr02:31276795..31276819 (25 bp)
TCAGTAATGACCGATGCCATCTCCT
LOC_Os02g51120
OsAffx.3034.1.S1_at--855--8191Chr02:31276837..31276861 (25 bp)
GGAAGTAGCTACTTGCCTTCAACAG
LOC_Os02g51120
OsAffx.3034.1.S1_at--47--5931Chr02:31276945..31276969 (25 bp)
GAGCATCAGACCATGGGTATCCTCT
LOC_Os02g51120
OsAffx.3034.1.S1_at--401--5191Chr02:31276972..31276996 (25 bp)
GCAATCCCACTTGATATTACAGCTG
LOC_Os02g51120
OsAffx.3034.1.S1_at--752--6591Chr02:31276998..31277022 (25 bp)
GATTGACATTGCATCCATGGTTTTC
LOC_Os02g51120
OsAffx.3034.1.S1_at--1011--7871Chr02:31277016..31277040 (25 bp)
GGTTTTCAATGCATCATCCTTCACA
LOC_Os02g51120
OsAffx.3034.1.S1_at--690--6071Chr02:31277074..31277098 (25 bp)
GAGTTTGGCCAACCACAGAAGTGCA
LOC_Os02g51120
OsAffx.3034.1.S1_at--135--6271Chr02:31277123..31277147 (25 bp)
GATGTGTGGTCGACATGCCTGATGT
LOC_Os02g51120
OsAffx.3034.1.S1_at--884--2451Chr02:31277152..31277176 (25 bp)
AACAATATCAACAGCGGTCCACGGT
LOC_Os02g51120
OsAffx.3034.1.S1_at--737--5271Chr02:31277219..31277243 (25 bp)
GAATGACCTTGCCATGGGAATCACT
LOC_Os02g51120
OsAffx.3034.1.S1_at--127--3071Chr02:31277237..31277261 (25 bp)
AATCACTCCCTTGCACGACAGAAGT
LOC_Os02g51120
Target Sequence 
TCAGTAATGACCGATGCCATCTCCTCCACCATCCAGTTCACCGGAAGTAGCTACTTGCCTTCAACAGTTCCTTCATGCCA
CAACCCACTCAGCATGATTGACAGCAACAGCAGGCCAGATGCATCTGTACCTCTACCCTCACCGGTTGCAGAGCATCAGA
CCATGGGTATCCTCTCAGCAATCCCACTTGATATTACAGCTGGGATTGACATTGCATCCATGGTTTTCAATGCATCATCC
TTCACACTCCCAAACATGGATAGAATGACTGCAAACATAGAGTTTGGCCAACCACAGAAGTGCAACAGCAGCAGCAGCAT
GACCAACAGATGTGTGGTCGACATGCCTGATGTTGCTAACAATATCAACAGCGGTCCACGGTCCATCAACTTCAACCTGC
AAGGAACACTTTCTGATGACTGGAGAATGACCTTGCCATGGGAATCACTCCCTTGCACGACAGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis