Browse Element(s) Details


OsAffx.30343.1.S1_at

Description gb:NM_195049.1
DB_XREF= gi:37531457
TID=OsAffx.30343.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0015J03.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0872010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08680OsAffx.8454.1.S1_at10/1110+4475208..4480054hypothetical protein
LOC_Os10g08690OsAffx.20711.1.S1_x_at11/1110+4480751..4480996retrotransposon protein, putative, unclassified
LOC_Os10g08696Os.45173.1.S1_x_at3/1110+4481739..4483757retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08702NANA10+4484046..4488360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08710OsAffx.20709.1.S1_at11/1110+4491444..4492361Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os10g08720OsAffx.30343.1.S1_at10/1110+4499057..4499606hypothetical protein
LOC_Os10g08730OsAffx.30344.1.S1_at11/1110+4501843..4503268hypothetical protein
LOC_Os10g08740Os.2987.3.S1_x_at1/1110+4504225..4507966retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g08750NANA10+4509887..4510673hypothetical protein
LOC_Os10g08760OsAffx.30345.1.S1_at11/1110+4514354..4514626hypothetical protein
LOC_Os10g08780Os.8682.1.S1_a_at11/1110+4523660..4524225expressed protein
LOC_Os10g08780Os.8682.1.S1_at11/1110+4523660..4524225expressed protein
LOC_Os10g08780Os.8682.2.S1_x_at8/1110+4523660..4524225expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30343.1.S1_at--471--7551Chr10:4499457..4499481 (25 bp)
GGGCCTAGTCAGGTGGTTCTCCCAT
LOC_Os10g08720
OsAffx.30343.1.S1_at--934--8411Chr10:4499456..4499480 (25 bp)
GGCCTAGTCAGGTGGTTCTCCCATG
LOC_Os10g08720
OsAffx.30343.1.S1_at--300--3711Chr10:4499453..4499477 (25 bp)
CTAGTCAGGTGGTTCTCCCATGCAT
LOC_Os10g08720
OsAffx.30343.1.S1_at--891--10051Chr10:4499452..4499476 (25 bp)
TAGTCAGGTGGTTCTCCCATGCATC
LOC_Os10g08720
OsAffx.30343.1.S1_at--804--7111Chr10:4499450..4499474 (25 bp)
GTCAGGTGGTTCTCCCATGCATCCA
LOC_Os10g08720
OsAffx.30343.1.S1_at--147--7731Chr10:4499446..4499470 (25 bp)
GGTGGTTCTCCCATGCATCCACCAA
LOC_Os10g08720
OsAffx.30343.1.S1_at--251--9031Chr10:4499433..4499457 (25 bp)
TGCATCCACCAACAAATGGTACCAA
LOC_Os10g08720
OsAffx.30343.1.S1_at--120--2471Chr10:4499423..4499447 (25 bp)
AACAAATGGTACCAACCCATGGCAA
LOC_Os10g08720
OsAffx.30343.1.S1_at--126--951Chr10:4499401..4499423 (23 bp)
AGGACAATACATGGATTATGCTGTG
LOC_Os10g08720
OsAffx.30343.1.S1_at--204--3191Chr10:4498959..4499419 (25 bp)
CAATACATGGATTATGCTGTGGTGG
NONE
OsAffx.30343.1.S1_at--930--9111Chr10:4499252..4499272 (21 bp)
TGCTGTGGTGGAGTGCAGGGTTATA
LOC_Os10g08720
Target Sequence 
GGGCCTAGTCAGGTGGTTCTCCCATGCATCCACCAACAAATGGTACCAACCCATGGCAAGGACAATACATGGATTATGCT
GTGGTGGAGTGCAGGGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis