Browse Element(s) Details


OsAffx.30348.1.S1_at

Description tigr:9638.m00769
TID=OsAffx.30348.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Retinal pigment epithelial membrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0898011/11zeaxanthin cleavage oxygenase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08930Os.9334.1.S1_at11/1110+4598127..460112240S ribosomal protein S20, putative, expressed
LOC_Os10g08940Os.7453.1.S1_x_at10/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08940Os.7453.2.S1_x_at10/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08940Os.7453.1.S1_at7/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08950NANA10+4609071..4609820hypothetical protein
LOC_Os10g08960Os.36435.2.S1_x_at6/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08960OsAffx.20707.1.S1_x_at3/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08960OsAffx.20707.2.S1_x_at1/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08960OsAffx.20707.1.S1_at1/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08970NANA10+4616361..4619716hAT family dimerisation domain containing protein
LOC_Os10g08980OsAffx.30348.1.S1_at11/1110+4623193..4626048zeaxanthin cleavage oxygenase, putative
LOC_Os10g08990Os.41248.4.S1_x_at1/1110+4626852..4630147retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g09000OsAffx.25805.1.S1_x_at8/1110+4634100..4634439hypothetical protein
LOC_Os10g09000OsAffx.25805.1.S1_at7/1110+4634100..4634439hypothetical protein
LOC_Os10g09020OsAffx.20705.2.S1_x_at10/1110+4647175..4650925hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009688biological_processabscisic acid biosynthesis
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009579cellular_componentthylakoid
GO:0045549molecular_function9-cis-epoxycarotenoid dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30348.1.S1_at--98--10271Chr10:4625277..4625301 (25 bp)
TTTGCAATCACGGAGCATTATGCCA
LOC_Os10g08980
OsAffx.30348.1.S1_at--138--6111Chr10:4625310..4625334 (25 bp)
GAGTCGCAACTTGTCATGTGTCCGA
LOC_Os10g08980
OsAffx.30348.1.S1_at--923--8971Chr10:4625335..4625359 (25 bp)
TGAACATGGCTCTACGTGGTGGCTC
LOC_Os10g08980
OsAffx.30348.1.S1_at--853--8831Chr10:4625585..4625609 (25 bp)
TGATACATATCAATCTCCGCACTGG
LOC_Os10g08980
OsAffx.30348.1.S1_at--1040--1951Chr10:4625605..4625629 (25 bp)
ACTGGTACCGTTTTGCGCACTGCAC
LOC_Os10g08980
OsAffx.30348.1.S1_at--397--411Chr10:4625663..4625687 (25 bp)
ATCAGGGCTACGTCGGTCGATACAA
LOC_Os10g08980
OsAffx.30348.1.S1_at--849--9371Chr10:4625679..4625703 (25 bp)
TCGATACAACCGCTATGGATACTTT
LOC_Os10g08980
OsAffx.30348.1.S1_at--253--10831Chr10:4625702..4625726 (25 bp)
TTGGTGTAAGCGCACCGTTACCCAG
LOC_Os10g08980
OsAffx.30348.1.S1_at--858--3411Chr10:4625739..4625763 (25 bp)
CAGAAAGCTCGACTTTGCCATGGTT
LOC_Os10g08980
OsAffx.30348.1.S1_at--976--7971Chr10:4625931..4625955 (25 bp)
GGATGCCATGTCTCCAGAACTGGAA
LOC_Os10g08980
OsAffx.30348.1.S1_at--1013--851Chr10:4625993..4626017 (25 bp)
ATGGCTTTCATGGTCGTTTTATCAC
LOC_Os10g08980
Target Sequence 
TTTGCAATCACGGAGCATTATGCCATCTTCCCTGAGTCGCAACTTGTCATGTGTCCGATGAACATGGCTCTACGTGGTGG
CTCGCTGATAGGATTGGATAGTGCAATGGTTGACATGATACATATCAATCTCCGCACTGGTACCGTTTTGCGCACTGCAC
TCTCACTGGAGAGCCTTGAGTTTGGTGTAATTCATCAGGGCTACGTCGGTCGATACAACCGCTATGGATACTTTGGTGTA
AGCGCACCGTTACCCAGGTTCTCTGGAATCAGAAAGCTCGACTTTGCCATGGTTGGTGCTGACGACTGCACGGTTGCACG
CCGTGACTTTGGCCCCGGGTGCTTTGTTGGGGAGCCATTTTTCGTGCCAAGCAATGATAATGGGGATGGTAATGAGGACA
ATGGATATGTGGTGTGCTATACACACAAAGAGGATACCGGAGAGAGCCAGTTCGTGGTGATGGATGCCATGTCTCCAGAA
CTGGAAATTGTTGCAGCGGTGCAGCTGCCTGCCCGTGTTCCCTATGGCTTTCATGGTCGTTTTATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis