Browse Element(s) Details


OsAffx.30369.1.S1_at

Description tigr:9638.m00878
TID=OsAffx.30369.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1005011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10030OsAffx.30368.1.S1_at11/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.50043.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.57516.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10040OsAffx.6629.1.S1_at11/1110+5227474..5233312Cytochrome P450 family protein
LOC_Os10g10050OsAffx.30369.1.S1_at11/1110+5235877..5236083expressed protein
LOC_Os10g10050OsAffx.30369.1.S1_x_at11/1110+5235877..5236083expressed protein
LOC_Os10g10060OsAffx.20668.1.S1_at11/1110+5237005..5237548hypothetical protein
LOC_Os10g10080Os.22635.1.S1_s_at11/1110+5253084..5256529exostosin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30369.1.S1_at--69--7411Chr10:5236029..5236053 (25 bp)
GTGATCCGTTTGGTCTTTGTGAAAG
LOC_Os10g10050
OsAffx.30369.1.S1_at--82--8851Chr10:5236028..5236052 (25 bp)
TGATCCGTTTGGTCTTTGTGAAAGG
LOC_Os10g10050
OsAffx.30369.1.S1_at--314--7131Chr10:5236017..5236041 (25 bp)
GTCTTTGTGAAAGGGAACACCGATC
LOC_Os10g10050
OsAffx.30369.1.S1_at--700--7271Chr10:5236011..5236035 (25 bp)
GTGAAAGGGAACACCGATCGTCGCC
LOC_Os10g10050
OsAffx.30369.1.S1_at--434--2311Chr10:5236008..5236032 (25 bp)
AAAGGGAACACCGATCGTCGCCCAT
LOC_Os10g10050
OsAffx.30369.1.S1_at--1143--2471Chr10:5236002..5236026 (25 bp)
AACACCGATCGTCGCCCATGCGAAG
LOC_Os10g10050
OsAffx.30369.1.S1_at--972--6391Chr10:5235996..5236020 (25 bp)
GATCGTCGCCCATGCGAAGCAGACG
LOC_Os10g10050
OsAffx.30369.1.S1_at--556--7231Chr10:5235992..5236016 (25 bp)
GTCGCCCATGCGAAGCAGACGGGAT
LOC_Os10g10050
OsAffx.30369.1.S1_at--940--4151Chr10:5235990..5236014 (25 bp)
CGCCCATGCGAAGCAGACGGGATGA
LOC_Os10g10050
OsAffx.30369.1.S1_at--680--3471Chr10:5235949..5235973 (25 bp)
CAGGGGCCTCCCTATCATCGGCGAG
LOC_Os10g10050
OsAffx.30369.1.S1_at--742--5791Chr10:5235925..5235949 (25 bp)
GACGCTCGAGTTCCTCGCCCTGAGC
LOC_Os10g10050
Target Sequence 
GTGATCCGTTTGGTCTTTGTGAAAGGGAACACCGATCGTCGCCCATGCGAAGCAGACGGGATGAGGATGGTGCCGGGGTC
CAGGGGCCTCCCTATCATCGGCGAGACGCTCGAGTTCCTCGCCCTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis