Browse Element(s) Details


OsAffx.30371.1.S1_at

Description tigr:9638.m00902
TID=OsAffx.30371.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g407906/11expressed protein
LOC_Os10g102806/11hypothetical protein
LOC_Os07g239302/11expressed protein
LOC_Os06g010501/11hypothetical protein
LOC_Os06g010601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40780Os.4089.1.S1_at11/1110+21554731..21573899transcriptional regulator, putative, expressed
LOC_Os10g40780Os.56157.1.A1_at1/1110+21554731..21573899transcriptional regulator, putative, expressed
LOC_Os10g40790Os.46319.1.S1_s_at10/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.49499.1.S1_at9/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.17829.1.S1_at9/1110+21577938..21585323expressed protein
LOC_Os10g40790OsAffx.30371.1.S1_at6/1110+21577938..21585323expressed protein
LOC_Os10g40790OsAffx.12663.1.S1_at3/1110+21577938..21585323expressed protein
LOC_Os10g40790OsAffx.4491.1.S1_at1/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.26733.2.S1_x_at1/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.52575.1.S1_x_at1/1110+21577938..21585323expressed protein
LOC_Os10g40800OsAffx.7916.1.S1_at11/1110+21587702..21591963retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g40802NANA10+21601568..21602690NA
LOC_Os10g40804Os.2741.4.S1_x_at10/1110+21604687..21607349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40806NANA10+21609129..21610643hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30371.1.S1_at--949--214Chr10:21582034..21582054 (21 bp)
ATTTGTCAAGGTGCATGATCGTGGT
LOC_Os10g40790
OsAffx.30371.1.S1_at--191--9731NONE
TCAAGGTGCATGATCGTGGTTGCCT
NONE
OsAffx.30371.1.S1_at--258--1051NONE
AGGTGCATGATCGTGGTTGCCTTCA
NONE
OsAffx.30371.1.S1_at--74--7751NONE
GGTGCATGATCGTGGTTGCCTTCAT
NONE
OsAffx.30371.1.S1_at--574--4991NONE
GCATGATCGTGGTTGCCTTCATGTT
NONE
OsAffx.30371.1.S1_at--353--712Chr10:21584567..21584978 (25 bp)
ATGATCGTGGTTGCCTTCATGTTAA
LOC_Os10g40790
OsAffx.30371.1.S1_at--47--6412Chr10:21584960..21584980 (21 bp)
GATCGTGGTTGCCTTCATGTTAAAA
LOC_Os10g40790
OsAffx.30371.1.S1_at--181--9431NONE
TCGTGGTTGCCTTCATGTTAAAAGT
NONE
OsAffx.30371.1.S1_at--818--7892Chr10:21584962..21584986 (25 bp)
GGTTGCCTTCATGTTAAAAGTGGGT
LOC_Os10g40790
OsAffx.30371.1.S1_at--937--8653Chr10:21585043..21585231 (25 bp)
TGTGAAAGTGAGGTACACCCATGGT
LOC_Os10g40790
OsAffx.30371.1.S1_at--531--5453Chr10:21585046..21585234 (25 bp)
GAAAGTGAGGTACACCCATGGTACC
LOC_Os10g40790
Target Sequence 
ATTTGTCAAGGTGCATGATCGTGGTTGCCTTCATGTTAAAAGTGGGTCACAATTTCCAGTATTGGAATCTAATTCAGTAC
ATGGCAATGAAATTTCATTGAGCTGTGAAAGTGAGGTACACCCATGGTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis