Browse Element(s) Details


OsAffx.30398.1.S1_at

Description tigr:9638.m01102
TID=OsAffx.30398.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=nodulin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1219011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12160Os.45173.5.S1_x_at4/1110+6528331..6536158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12160Os.45173.1.S1_x_at1/1110+6528331..6536158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12174OsAffx.30397.2.S1_at11/1110+6547699..6557457hypothetical protein
LOC_Os10g12174OsAffx.30397.1.S1_x_at10/1110+6547699..6557457hypothetical protein
LOC_Os10g12174OsAffx.30397.3.S1_x_at5/1110+6547699..6557457hypothetical protein
LOC_Os10g12190OsAffx.30398.1.S1_at11/1110+6559246..6562108Integral membrane protein DUF6 containing protein, expressed
LOC_Os10g12200OsAffx.30399.1.S1_at11/1110+6562608..6563951F-box domain containing protein
LOC_Os10g12220NANA10+6568233..6571191retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12226Os.10703.2.S1_x_at1/1110+6571508..6573997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12232NANA10+6574669..6577596retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12240NANA10+6581229..6584682retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30398.1.S1_at--444--931Chr10:6560692..6560716 (25 bp)
AGGCAGCAACTGCATTTGGGCACCA
LOC_Os10g12190
OsAffx.30398.1.S1_at--570--431Chr10:6560733..6560757 (25 bp)
ATCTTGCTCGCCATAAGCTGTTTAA
LOC_Os10g12190
OsAffx.30398.1.S1_at--691--1151Chr10:6560765..6560796 (25 bp)
AGTCTGGTACACTGTGCAGGCTCAG
LOC_Os10g12190
OsAffx.30398.1.S1_at--769--31Chr10:6561452..6561476 (25 bp)
ATTGGTCCACAGTTGCTACATGCTT
LOC_Os10g12190
OsAffx.30398.1.S1_at--981--9871Chr10:6561468..6561492 (25 bp)
TACATGCTTCGTTGGGTGTATCCAG
LOC_Os10g12190
OsAffx.30398.1.S1_at--407--6531Chr10:6561695..6561719 (25 bp)
GATTTCATGGGTTGTCACGCAGCGA
LOC_Os10g12190
OsAffx.30398.1.S1_at--1078--2611Chr10:6561725..6561749 (25 bp)
AACCTACCCATCGATGTTTTGTGCT
LOC_Os10g12190
OsAffx.30398.1.S1_at--545--7411Chr10:6561756..6561780 (25 bp)
GTGTTGTTCACGACGATTCTTGACT
LOC_Os10g12190
OsAffx.30398.1.S1_at--1019--10751Chr10:6561775..6561799 (25 bp)
TTGACTCGTTGCTTCTAGGCCATGA
LOC_Os10g12190
OsAffx.30398.1.S1_at--281--8931Chr10:6561797..6561964 (25 bp)
TGACCTCTCGGTTGGAAGTATTCTT
LOC_Os10g12190
OsAffx.30398.1.S1_at--443--5271Chr10:6561966..6561990 (25 bp)
GAATGTTACTGATCCTTGCTGGGCT
LOC_Os10g12190
Target Sequence 
AGGCAGCAACTGCATTTGGGCACCACCACATCCGTGGAACCATCTTGCTCGCCATAAGCTGTTTAAGCCTTGCAGTCTGG
TACACTGTGCAGGCTCAGATGCTGAAAGTATTCCCATACAAGTATTGGTCCACAGTTGCTACATGCTTCGTTGGGTGTAT
CCAGATGGCCATTATAGGGGTCGCGATGAACAGAGAAAAGGCGACATGGAAACTGAAATGGAACATGAGCTTGCTCACCA
TCATCTACTCTGCGATACTGAACACAGCTGCCAAGTTCGTGATGATTTCATGGGTTGTCACGCAGCGAGGACCAACCTAC
CCATCGATGTTTTGTGCTGTTTCAGTGTTGTTCACGACGATTCTTGACTCGTTGCTTCTAGGCCATGACCTCTCGGTTGG
AAGTATTCTTGGAATGTTACTGATCCTTGCTGGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis