Browse Element(s) Details


OsAffx.30401.1.S1_at

Description tigr:9638.m01123
TID=OsAffx.30401.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1239011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12354Os.46525.2.S1_x_at11/1110+6633645..6643454NUMOD3 motif family protein, expressed
LOC_Os10g12354Os.46525.1.S1_at11/1110+6633645..6643454NUMOD3 motif family protein, expressed
LOC_Os10g12380OsAffx.30400.1.S1_at11/1110+6655256..6655610hypothetical protein
LOC_Os10g12380OsAffx.30400.1.S1_x_at11/1110+6655256..6655610hypothetical protein
LOC_Os10g12390OsAffx.30401.1.S1_at11/1110+6662203..6662646hypothetical protein
LOC_Os10g12400Os.46711.1.S1_at10/1110+6668457..6671293nodulin MtN21 family protein, putative, expressed
LOC_Os10g12410OsAffx.8372.1.S1_at11/1110+6682340..6684893transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30401.1.S1_at--334--1651Chr10:6662235..6662259 (25 bp)
AGCGAGGTGGAAGGCACCGGCGTCC
LOC_Os10g12390
OsAffx.30401.1.S1_at--81--3371Chr10:6662249..6662273 (25 bp)
CACCGGCGTCCATGGTGTTGGTGCA
LOC_Os10g12390
OsAffx.30401.1.S1_at--451--7271Chr10:6662256..6662280 (25 bp)
GTCCATGGTGTTGGTGCAGCTCTTC
LOC_Os10g12390
OsAffx.30401.1.S1_at--605--6291Chr10:6662289..6662313 (25 bp)
GATGATTCTGCTATCGAAGGTGTCC
LOC_Os10g12390
OsAffx.30401.1.S1_at--826--6571Chr10:6662292..6662316 (25 bp)
GATTCTGCTATCGAAGGTGTCCATC
LOC_Os10g12390
OsAffx.30401.1.S1_at--468--4871Chr10:6662298..6662322 (25 bp)
GCTATCGAAGGTGTCCATCAACGGT
LOC_Os10g12390
OsAffx.30401.1.S1_at--120--7271Chr10:6662310..6662334 (25 bp)
GTCCATCAACGGTGGCATGTTCGTG
LOC_Os10g12390
OsAffx.30401.1.S1_at--83--2591Chr10:6662317..6662341 (25 bp)
AACGGTGGCATGTTCGTGTTCGCGC
LOC_Os10g12390
OsAffx.30401.1.S1_at--51--7431Chr10:6662332..6662356 (25 bp)
GTGTTCGCGCTGCTCTCGTACCGCA
LOC_Os10g12390
OsAffx.30401.1.S1_at--781--9391Chr10:6662347..6662371 (25 bp)
TCGTACCGCAGCGTATTCGGTGCCA
LOC_Os10g12390
OsAffx.30401.1.S1_at--538--3391Chr10:6662355..6662379 (25 bp)
CAGCGTATTCGGTGCCATCTTCATC
LOC_Os10g12390
Target Sequence 
AGCGAGGTGGAAGGCACCGGCGTCCATGGTGTTGGTGCAGCTCTTCAACTCGGGGATGATTCTGCTATCGAAGGTGTCCA
TCAACGGTGGCATGTTCGTGTTCGCGCTGCTCTCGTACCGCAGCGTATTCGGTGCCATCTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis