Browse Element(s) Details


OsAffx.30412.1.S1_at

Description tigr:9638.m01249
TID=OsAffx.30412.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g128501/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12840OsAffx.24217.1.S1_at11/112+6769015..6778174DEAD/DEAH box helicase family protein
LOC_Os02g12850Os.9386.2.S1_x_at11/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850Os.9386.1.S1_at8/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850OsAffx.30412.1.S1_at1/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12860OsAffx.2587.1.S1_at11/112+6788990..6789840hypothetical protein
LOC_Os02g12870Os.25870.2.S1_a_at10/112+6791043..6795073membrane protein, putative, expressed
LOC_Os02g12880OsAffx.24218.1.S1_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12880Os.9096.2.S1_a_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12890Os.50611.1.S1_x_at11/112+6802706..6805314Cytochrome P450 family protein, expressed
LOC_Os02g12900Os.57132.1.S1_at11/112+6810648..6814112Cysteine synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30412.1.S1_at--1076--5151Chr10:7427967..7427991 (25 bp)
GCAACCGCTATCAACAAGCAATCCT
NONE
OsAffx.30412.1.S1_at--904--3451Chr10:7428011..7428035 (25 bp)
CAGGCTGAACCGATGCTACCAGGGT
NONE
OsAffx.30412.1.S1_at--162--1791Chr10:7428019..7428043 (25 bp)
ACCGATGCTACCAGGGTTCAGCCGA
NONE
OsAffx.30412.1.S1_at--125--6691Chr10:7428034..7428058 (25 bp)
GTTCAGCCGAACTGTCCGAACCTGG
NONE
OsAffx.30412.1.S1_at--1097--2552Chr10:7428043..7428067 (25 bp)
AACTGTCCGAACCTGGGCTGGCCCA
NONE
OsAffx.30412.1.S1_at--690--4351Chr10:7428065..7428089 (25 bp)
CCAGCAGGCCTCCAGACATAGCAAG
NONE
OsAffx.30412.1.S1_at--178--1411Chr10:7428078..7428102 (25 bp)
AGACATAGCAAGGTCACTGACAAGT
NONE
OsAffx.30412.1.S1_at--610--3831Chr10:7428094..7428118 (25 bp)
CTGACAAGTGGGTTCTTATGACGGT
NONE
OsAffx.30412.1.S1_at--1092--8493Chr10:7428121..7428145 (25 bp)
TGGCAGTTATGGTGGTTTCTAGGAT
NONE
OsAffx.30412.1.S1_at--1060--791Chr10:7428129..7428153 (25 bp)
ATGGTGGTTTCTAGGATGGTTACTC
NONE
OsAffx.30412.1.S1_at--972--10571Chr10:7428137..7428161 (25 bp)
TTCTAGGATGGTTACTCCTGACATG
NONE
Target Sequence 
GCAACCGCTATCAACAAGCAATCCTGGACGTCCACGTGTAAGGCCAGGCTGAACCGATGCTACCAGGGTTCAGCCGAACT
GTCCGAACCTGGGCTGGCCCAGCAGGCCTCCAGACATAGCAAGGTCACTGACAAGTGGGTTCTTATGACGGTTGTGGCAG
TTATGGTGGTTTCTAGGATGGTTACTCCTGACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis