Browse Element(s) Details


OsAffx.30422.2.S1_x_at

Description tigr:9639.m03054
TID=OsAffx.30422.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3400011/11hypothetical protein
LOC_Os09g029101/11hypothetical protein
LOC_Os10g152301/11hypothetical protein
LOC_Os08g189701/11Pectate lyase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33970OsAffx.7288.1.S1_at11/1111+19357334..19358206expressed protein
LOC_Os11g33980OsAffx.31287.1.S1_at11/1111+19358315..19362454hypothetical protein
LOC_Os11g33980OsAffx.20497.1.S1_at1/1111+19358315..19362454hypothetical protein
LOC_Os11g33990OsAffx.7289.1.S1_at11/1111+19368786..19369638expressed protein
LOC_Os11g34000OsAffx.30422.2.S1_x_at11/1111+19370862..19371146hypothetical protein
LOC_Os11g34000OsAffx.30422.1.S1_x_at1/1111+19370862..19371146hypothetical protein
LOC_Os11g34010OsAffx.19147.1.S1_at11/1111+19372416..19372758hypothetical protein
LOC_Os11g34020OsAffx.19148.1.S1_x_at11/1111+19374030..19374944expressed protein
LOC_Os11g34030OsAffx.7291.1.S1_at11/1111+19387263..19388599hypothetical protein
LOC_Os11g34040OsAffx.31288.1.S1_at11/1111+19392318..19392814hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016829molecular_functionlyase activity
GO:0030570molecular_functionpectate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30422.2.S1_x_at--1042--3611Chr11:19370892..19370916 (25 bp)
CTTGCCTCCAAGCTCCTTAAGTTTG
LOC_Os11g34000
OsAffx.30422.2.S1_x_at--543--4791Chr11:19370903..19370927 (25 bp)
GCTCCTTAAGTTTGACGGGGCTCGA
LOC_Os11g34000
OsAffx.30422.2.S1_x_at--1109--7571Chr11:19370920..19370944 (25 bp)
GGGCTCGACAGCTACCATCGTCTCT
LOC_Os11g34000
OsAffx.30422.2.S1_x_at--626--431Chr11:19370936..19370960 (25 bp)
ATCGTCTCTCCCCACTACAAGAAAT
LOC_Os11g34000
OsAffx.30422.2.S1_x_at--1133--4011Chr11:19370938..19370962 (25 bp)
CGTCTCTCCCCACTACAAGAAATAT
LOC_Os11g34000
OsAffx.30422.2.S1_x_at--1019--6727Chr11:19370961..19370985 (25 bp)
ATGACCTTCTGTGACGAATTCCTCG
LOC_Os11g34000
OsAffx.30422.2.S1_x_at--554--52112Chr12:9751269..9751293 (25 bp)
GAATTCCTCGTGACATCGGAGCTAT
NONE
OsAffx.30422.2.S1_x_at--177--5674Chr11:19370987..19371011 (25 bp)
GACATCGGAGCTATTCGTCACTAGC
LOC_Os11g34000
OsAffx.30422.2.S1_x_at--348--9397Chr11:19371001..19371025 (25 bp)
TCGTCACTAGCACATTCCATTTTAT
LOC_Os11g34000
OsAffx.30422.2.S1_x_at--503--2891Chr11:19371065..19371089 (25 bp)
AAGGTGTTCGTCGTTAATGCCAACT
LOC_Os11g34000
OsAffx.30422.2.S1_x_at--945--6753Chr12:9751370..9751394 (25 bp)
GTTAATGCCAACTAGAAATCGTCAT
NONE
Target Sequence 
CTTGCCTCCAAGCTCCTTAAGTTTGACGGGGCTCGACAGCTACCATCGTCTCTCCCCACTACAAGAAATATGACCTTCTG
TGACGAATTCCTCGTGACATCGGAGCTATTCGTCACTAGCACATTCCATTTTATGACGATTAGTATGAGATGGGGTGGCT
TAGTGACGAAAAAAAGGTGTTCGTCGTTAATGCCAACTAGAAATCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30422.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis