Browse Element(s) Details


OsAffx.30503.1.S1_at

Description tigr:9638.m01923
TID=OsAffx.30503.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2272011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22660OsAffx.20435.1.S1_at11/1110+11447754..11448221hypothetical protein
LOC_Os10g22670OsAffx.30501.1.S1_at10/1110+11448576..11449285hypothetical protein
LOC_Os10g22680OsAffx.30502.1.S1_x_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.30502.1.S1_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.22642.1.S1_x_at1/1110+11451129..11451915hypothetical protein
LOC_Os10g22690Os.52765.1.S1_at4/1110+11453165..11455525hypothetical protein
LOC_Os10g22700OsAffx.20433.1.S1_x_at11/1110+11460867..11461716expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_x_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.28845.1.S1_x_at1/1110+11464845..11466882expressed protein
LOC_Os10g22720OsAffx.30503.1.S1_at11/1110+11469998..11473960hypothetical protein
LOC_Os10g22730Os.7322.1.S1_at11/1110+11475856..11481847expressed protein
LOC_Os10g22730Os.52023.1.S1_at10/1110+11475856..11481847expressed protein
LOC_Os10g22740OsAffx.8205.1.S1_at11/1110+11491121..11492666hypothetical protein
LOC_Os10g22750Os.46834.1.S1_at11/1110+11494547..11495515expressed protein
LOC_Os10g22760OsAffx.222.1.S1_at11/1110+11498343..11499747transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30503.1.S1_at--84--5311Chr10:11472965..11472989 (25 bp)
GAAGGCACCGCGTAAAGAGCAGCTG
LOC_Os10g22720
OsAffx.30503.1.S1_at--997--6851Chr10:11473013..11473037 (25 bp)
GTTTGACTGGCAAGTTCTGGCTGAG
LOC_Os10g22720
OsAffx.30503.1.S1_at--577--7331Chr10:11473056..11473080 (25 bp)
GTGCAAATGGCCTTGAACATCATCA
LOC_Os10g22720
OsAffx.30503.1.S1_at--1004--3531Chr10:11473089..11473113 (25 bp)
CATCCGGGCAGAAACTACGAGCTCT
LOC_Os10g22720
OsAffx.30503.1.S1_at--360--9951Chr10:11473104..11473128 (25 bp)
TACGAGCTCTGGGAGATCTCTGCAA
LOC_Os10g22720
OsAffx.30503.1.S1_at--1059--6011Chr10:11473143..11473167 (25 bp)
GAGATGGAACTATCCTATTGCCACT
LOC_Os10g22720
OsAffx.30503.1.S1_at--1085--10211Chr10:11473158..11473182 (25 bp)
TATTGCCACTACAACTTCACTGCGT
LOC_Os10g22720
OsAffx.30503.1.S1_at--294--4651Chr10:11473179..11473203 (25 bp)
GCGTACTCCCCAAGCAGTGGATTTG
LOC_Os10g22720
OsAffx.30503.1.S1_at--1095--10551Chr10:11473209..11473233 (25 bp)
TTCTTCGCCGAGACGAGCGACGATG
LOC_Os10g22720
OsAffx.30503.1.S1_at--778--1211Chr10:11473250..11473274 (25 bp)
AGTTCACTCGTGGTGTTCAATCGAA
LOC_Os10g22720
OsAffx.30503.1.S1_at--396--6051Chr10:11473880..11473904 (25 bp)
GAGATTTACCTTGTACACCCAAGCA
LOC_Os10g22720
Target Sequence 
GAAGGCACCGCGTAAAGAGCAGCTGCAGAAGGAGGCTATGGATGATATGTTTGACTGGCAAGTTCTGGCTGAGAAGAGGC
ACACCAAGAATGTGCAAATGGCCTTGAACATCATCAACAGGAAGCATCCGGGCAGAAACTACGAGCTCTGGGAGATCTCT
GCAAAGAGCACGATCGTTGAGATGGAACTATCCTATTGCCACTACAACTTCACTGCGTACTCCCCAAGCAGTGGATTTGG
GTTCTTCTTCGCCGAGACGAGCGACGATGTTAAATGTGAGGACCAAGTTCACTCGTGGTGTTCAATCGAAACAGGCGAAA
TAGGGTGTTGTGTGCGATGCATGAGTTATGAGATTTACCTTGTACACCCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis