Browse Element(s) Details


OsAffx.3052.1.S1_at

Description tigr:9632.m04843
TID=OsAffx.3052.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable poly(A) polymerase (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4987011/11Poly polymerase central domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49840OsAffx.24949.3.S1_x_at1/114+29490079..29493431retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49850NANA4+29497882..29498387expressed protein
LOC_Os04g49860OsAffx.14350.1.S1_at11/114+29500458..29510657DNA replication helicase, putative, expressed
LOC_Os04g49870OsAffx.3052.1.S1_at11/114+29511727..29513397Poly polymerase central domain containing protein
LOC_Os04g49870Os.29800.1.S1_x_at2/114+29511727..29513397Poly polymerase central domain containing protein
LOC_Os04g49880OsAffx.14351.1.S1_x_at11/114+29520965..29521246hypothetical protein
LOC_Os04g49890Os.27657.1.A1_at11/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49890Os.24644.1.S1_at9/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49900Os.20283.1.S1_at9/114+29535851..29543031ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3052.1.S1_at--189--6591Chr04:29512800..29512824 (25 bp)
GTTCCAGCCGTTCAACTTCTTCGGC
LOC_Os04g49870
OsAffx.3052.1.S1_at--721--3651Chr04:29512815..29512839 (25 bp)
CTTCTTCGGCGCGTACAAGAGCTAC
LOC_Os04g49870
OsAffx.3052.1.S1_at--105--4651Chr04:29512825..29512849 (25 bp)
GCGTACAAGAGCTACCTCCAGGTGG
LOC_Os04g49870
OsAffx.3052.1.S1_at--30--1351Chr04:29512832..29512856 (25 bp)
AGAGCTACCTCCAGGTGGACGTGAC
LOC_Os04g49870
OsAffx.3052.1.S1_at--887--10551Chr04:29513038..29513062 (25 bp)
TTCTTCGTGGGCTTGTCCAAGCCAC
LOC_Os04g49870
OsAffx.3052.1.S1_at--497--8651Chr04:29513045..29513069 (25 bp)
TGGGCTTGTCCAAGCCACCGGCGCA
LOC_Os04g49870
OsAffx.3052.1.S1_at--471--7011Chr04:29513136..29513160 (25 bp)
GTACATGTACGACTACTGGAGGCCC
LOC_Os04g49870
OsAffx.3052.1.S1_at--814--1851Chr04:29513144..29513168 (25 bp)
ACGACTACTGGAGGCCCGGCATGGA
LOC_Os04g49870
OsAffx.3052.1.S1_at--393--5311Chr04:29513193..29513217 (25 bp)
GAAGGACCTGCCGTCCTACGTGCTG
LOC_Os04g49870
OsAffx.3052.1.S1_at--880--9131Chr04:29513216..29513240 (25 bp)
TGCGGCAGCTGCTTCGCTCGCCTGG
LOC_Os04g49870
OsAffx.3052.1.S1_at--354--391Chr04:29513306..29513330 (25 bp)
ATCACTCCGCTTCGAGCTCGAGCAG
LOC_Os04g49870
Target Sequence 
GTTCCAGCCGTTCAACTTCTTCGGCGCGTACAAGAGCTACCTCCAGGTGGACGTGACGGTGACCGGCGGGGAGGAGGACG
ACCTCCGCGAGTGGAAGGGCTGGGTGGAGTCGCGGCTGAGGCTGCTGTCGGCCAGGGTGGAGGCGGACACGTCCGGGATG
CTGCTCTGCCACCTGCACCCGCAGCCGTACGCCGCCGAGCCCCACAACGAGCCGCGGCGGCGGCGGCGCACGTCGTCCTT
CTTCGTGGGCTTGTCCAAGCCACCGGCGCAGCCGCAGCAGCAGCAGCATCAGCTGTTCGACCTCCGCGCGACGACAGAGG
GGTTCAAGGAGGAGGTGTACATGTACGACTACTGGAGGCCCGGCATGGAGGTCGCGGTGGCGCACGTCCGCCGGAAGGAC
CTGCCGTCCTACGTGCTGCGGCAGCTGCTTCGCTCGCCTGGCCGCCATGATCAGCTCAAGAGGAAGCGCGCCGACGATGA
TCCGTCTTCTTCCCCTGCTGCTTCCGATCACTCCGCTTCGAGCTCGAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis