Browse Element(s) Details


OsAffx.30522.1.S1_at

Description tigr:9636.m01261
TID=OsAffx.30522.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1284011/11beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os10g248009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12800Os.54847.1.S1_at11/118+7577145..7582056Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os08g12810OsAffx.5796.1.S1_at9/118+7582705..7583889hypothetical protein
LOC_Os08g12820Os.15239.1.S1_at11/118+7585220..7590670Proteasome/cyclosome repeat family protein, expressed
LOC_Os08g12830Os.46126.1.S1_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.46126.1.S1_x_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.5970.1.S1_at4/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12840OsAffx.30522.1.S1_at11/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840OsAffx.29165.1.S1_at10/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840Os.47868.1.S1_at8/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12850Os.11196.1.S1_at11/118+7610445..7613923pentatricopeptide, putative, expressed
LOC_Os08g12850OsAffx.29166.1.S1_at11/118+7610445..7613923pentatricopeptide, putative, expressed
LOC_Os08g12860NANA8+7619859..7621711transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12870Os.47463.1.S1_x_at6/118+7623934..7627631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12870Os.14491.2.S1_x_at5/118+7623934..7627631transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0019171molecular_function3-hydroxyacyl-[acyl-carrier protein] dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30522.1.S1_at--251--8892Chr10:12422570..12422594 (25 bp)
TGAGGTGGCCAACAATGGATTGTCC
LOC_Os10g24800
OsAffx.30522.1.S1_at--178--6612Chr10:12422587..12422611 (25 bp)
GATTGTCCATCTTTCTTGATCCTAA
LOC_Os10g24800
OsAffx.30522.1.S1_at--680--9772Chr10:12422609..12422788 (25 bp)
TAAGAGGCTCAAATTACAGGATGGT
LOC_Os10g24800
OsAffx.30522.1.S1_at--243--8692Chr10:12423037..12423061 (25 bp)
TGTGCCAACCATGGCCTTATCATGG
LOC_Os10g24800
OsAffx.30522.1.S1_at--791--7972Chr10:12423060..12423084 (25 bp)
GGATGCTACCAACTCAGGGCCAAGA
LOC_Os10g24800
OsAffx.30522.1.S1_at--646--8972Chr10:12423102..12423126 (25 bp)
TGAACACTGCATATGAGATGTCATC
LOC_Os10g24800
OsAffx.30522.1.S1_at--714--1292Chr10:12423117..12423141 (25 bp)
AGATGTCATCTTCAGAAACGCCGCC
LOC_Os10g24800
OsAffx.30522.1.S1_at--932--1412Chr10:12423130..12423154 (25 bp)
AGAAACGCCGCCACTCAGAGCAGAC
LOC_Os10g24800
OsAffx.30522.1.S1_at--31--4052Chr10:12423174..12423198 (25 bp)
CGATGGACGTCGAGGTTCAGCTCCG
LOC_Os10g24800
OsAffx.30522.1.S1_at--1093--3391Chr08:7604780..7604801 (22 bp)
CAGCAGGCTCATTTCTGGTCAGTTA
LOC_Os08g12840
OsAffx.30522.1.S1_at--865--2111Chr08:7604443..7604467 (25 bp)
ACATGTGGGCTGGATATTGGAAATA
LOC_Os08g12840
Target Sequence 
TGAGGTGGCCAACAATGGATTGTCCATCTTTCTTGATCCTAAGAGGCTCAAATTACAGGATGGTGAGATTCCANACANGA
TGGAGGAAGAGAAACCATCAGCAGGTGTTCAACNTGATCCTANTGTGCCAACCATGGCCTTATCATGGATGCTACCAACT
CAGGGCCAAGAGACTANCCATGACACTATGAACACTGCATATGAGATGTCATCTTCAGAAACGCCGCCACTCAGAGCAGA
CCAAGCCGCCNCCGCGGCGCCGATGGACGTCGAGGTTCAGCTCCGGNAGCGGCAGCCTCAGGCGCCGCCGTGTCAGCAGG
CTCATTTCTGGTCAGTTAGTAATGATGAAGACATGTGGGCTGGATATTGGAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30522.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis