Browse Element(s) Details


OsAffx.30533.1.S1_s_at

Description gb:NM_196352.1
DB_XREF= gi:37534063
TID=OsAffx.30533.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative Tricarboxylate transport protein, mitochondrial precursor (OSJNBb0058B20.12), mRNA.
PROD=putative Tricarboxylate transport protein,mitochondrial precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2583011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25780Os.7216.1.S1_at11/1110+13028198..13031796Cell elongation protein DIMINUTO, putative, expressed
LOC_Os10g25780OsAffx.5776.1.S1_x_at1/1110+13028198..13031796Cell elongation protein DIMINUTO, putative, expressed
LOC_Os10g25789OsAffx.8157.1.S1_at11/1110+13038829..13040191NA
LOC_Os10g25800OsAffx.30531.1.S1_x_at11/1110+13043950..13044585hypothetical protein
LOC_Os10g25810OsAffx.30532.1.S1_at4/1110+13045463..13046476expressed protein
LOC_Os10g25819OsAffx.8156.1.S1_at6/1110+13052446..13053554NA
LOC_Os10g25830OsAffx.30533.1.S1_s_at11/1110+13055911..13057374Mitochondrial carrier protein, expressed
LOC_Os10g25840NANA10+13059373..13060839retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g25850OsAffx.18402.1.S1_at11/1110+13061476..13070797CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os10g25850Os.22789.1.A1_at11/1110+13061476..13070797CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os10g25870Os.46833.1.S1_at11/1110+13071280..13072064Dirigent-like protein, expressed
LOC_Os10g25880NANA10+13081191..13084243hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005476molecular_functioncarnitine:acyl carnitine antiporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30533.1.S1_s_at--82--8151Chr10:13056162..13056186 (25 bp)
GGACACCTCACTCTGATAGAGGCAT
LOC_Os10g25830
OsAffx.30533.1.S1_s_at--1138--10031Chr10:13056146..13056170 (25 bp)
TAGAGGCATCGTAGCTGTAACCAGA
LOC_Os10g25830
OsAffx.30533.1.S1_s_at--122--8751Chr10:13056131..13056155 (25 bp)
TGTAACCAGAGCAAACCAGCTTGTG
LOC_Os10g25830
OsAffx.30533.1.S1_s_at--81--2651Chr10:13056118..13056142 (25 bp)
AACCAGCTTGTGATTTGTAAACTGA
LOC_Os10g25830
OsAffx.30533.1.S1_s_at--952--6491Chr10:13056095..13056119 (25 bp)
GATAGTAAATCGTATGCACATGTAC
LOC_Os10g25830
OsAffx.30533.1.S1_s_at--471--751Chr10:13056076..13056100 (25 bp)
ATGTACATATCTAAAGCATCTGCGT
LOC_Os10g25830
OsAffx.30533.1.S1_s_at--875--1531Chr10:13056062..13056086 (25 bp)
AGCATCTGCGTTTCACATTGATCTC
LOC_Os10g25830
OsAffx.30533.1.S1_s_at--376--2071Chr10:13056048..13056072 (25 bp)
ACATTGATCTCCTCTACGACATTAG
LOC_Os10g25830
OsAffx.30533.1.S1_s_at--771--1851Chr10:13056033..13056057 (25 bp)
ACGACATTAGGATGCAAAGGCTAGA
LOC_Os10g25830
OsAffx.30533.1.S1_s_at--84--6552Chr10:8845415..8845437 (22 bp)
GATTTTGTTGGATTTTTGAAGCTCT
NONE
OsAffx.30533.1.S1_s_at--1088--2691Chr10:13055992..13056016 (25 bp)
AAGCTCTCTTTGTAAGTTGTGACGA
LOC_Os10g25830
Target Sequence 
GGACACCTCACTCTGATAGAGGCATCGTAGCTGTAACCAGAGCAAACCAGCTTGTGATTTGTAAACTGATAGTAAATCGT
ATGCACATGTACATATCTAAAGCATCTGCGTTTCACATTGATCTCCTCTACGACATTAGGATGCAAAGGCTAGATTTTGT
TGGATTTTTGAAGCTCTCTTTGTAAGTTGTGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30533.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis