Browse Element(s) Details


OsAffx.30536.1.S1_x_at

Description tigr:9638.m02207
TID=OsAffx.30536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g259801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g172301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g281501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g352001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g069601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g079801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g091801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g168401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g461101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g041801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g233301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g089401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g371801/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25920OsAffx.8152.1.S1_at11/1110+13100180..13101379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25930Os.46333.1.S1_at2/1110+13106703..13108209Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25930Os.46333.1.S1_x_at2/1110+13106703..13108209Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25940NANA10+13112221..13112758hypothetical protein
LOC_Os10g25950Os.46333.1.S1_x_at3/1110+13117793..13119521Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25950Os.46333.1.S1_at1/1110+13117793..13119521Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25960OsAffx.10637.1.S1_s_at11/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25960OsAffx.10637.3.S1_s_at9/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25960OsAffx.10637.4.S1_s_at7/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.32056.1.S1_at11/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.32056.1.S1_x_at10/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.30536.1.S1_x_at1/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25990OsAffx.20370.1.S1_at11/1110+13131377..13132303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g26000OsAffx.8150.1.S1_at11/1110+13132783..13133229hypothetical protein
LOC_Os10g26010Os.46333.1.S1_at11/1110+13136168..13137937Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g26010Os.46333.1.S1_x_at11/1110+13136168..13137937Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g26020NANA10+13141522..13141989retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26030OsAffx.20369.1.S1_at11/1110+13142778..13146554retrotransposon protein, putative, unclassified
LOC_Os10g26040Os.46012.2.S1_x_at9/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.46012.3.S1_x_at6/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.27088.1.A1_x_at3/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.45902.1.A1_x_at2/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040OsAffx.22094.1.S1_at1/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30536.1.S1_x_at--447--4076Chr10:13125315..13125339 (25 bp)
CGAGGGCAACGGTCCTGGCAGTGGC
NONE
OsAffx.30536.1.S1_x_at--628--39332Chr12:21804750..21804774 (25 bp)
CGGCGACTTGGGAAATTTTGGCAGC
NONE
OsAffx.30536.1.S1_x_at--790--92728Chr11:15677671..15677695 (25 bp)
TCGCGGGAGCCGGGACTTAGAAAAT
NONE
OsAffx.30536.1.S1_x_at--176--104540Chr12:21804806..21804830 (25 bp)
TTAGAAAATTTTGGCTCCCCGCGCT
NONE
OsAffx.30536.1.S1_x_at--488--42137Chr12:21804824..21804848 (25 bp)
CCGCGCTCCCTATATATAGGCGCAG
NONE
OsAffx.30536.1.S1_x_at--590--41537Chr12:21804825..21804849 (25 bp)
CGCGCTCCCTATATATAGGCGCAGA
NONE
OsAffx.30536.1.S1_x_at--30--45737Chr12:21804826..21804850 (25 bp)
GCGCTCCCTATATATAGGCGCAGAT
NONE
OsAffx.30536.1.S1_x_at--696--47938Chr12:21804828..21804852 (25 bp)
GCTCCCTATATATAGGCGCAGATCA
NONE
OsAffx.30536.1.S1_x_at--156--93138Chr12:21804830..21804854 (25 bp)
TCCCTATATATAGGCGCAGATCATC
NONE
OsAffx.30536.1.S1_x_at--558--12731Chr12:21804847..21804871 (25 bp)
AGATCATCGCATGCGGGCGGCTTAA
NONE
OsAffx.30536.1.S1_x_at--768--5955Chr12:21804857..21804881 (25 bp)
ATGCGGGCGGCTTAAGGGACCGCAT
NONE
Target Sequence 
CGAGGGCAACGGTCCTGGCAGTGGCGTCGGCGACGGCGAGGGGCGGGGCGACTTCGGGGAGGAGCCGGCGGTGGCGGGGC
GACTTTGGGGAGGAGCCGGCGGTGGCGGGGACGACGGCGACGGCGACTTGGGAAATTTTGGCAGCCTGGCGGCTAGGGTT
TCGCGGGAGCCGGGACTTAGAAAATTTTGGCTCCCCGCGCTCCCTATATATAGGCGCAGATCATCGCATGCGGGCGGCTT
AAGGGACCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30536.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis