Browse Element(s) Details


OsAffx.30544.1.S1_at

Description tigr:9638.m02255
TID=OsAffx.30544.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2644010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26430OsAffx.30543.1.S1_at11/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26430OsAffx.30543.2.S1_x_at8/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26430OsAffx.30543.2.S1_at8/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26440OsAffx.30544.1.S1_at10/1110+13433516..13434241hypothetical protein
LOC_Os10g26450NANA10+13434854..13435234hypothetical protein
LOC_Os10g26460NANA10+13442381..13442764hypothetical protein
LOC_Os10g26470Os.53224.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26470Os.46781.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26480OsAffx.30545.1.S1_at11/1110+13454423..13455100hypothetical protein
LOC_Os10g26480OsAffx.30633.1.S1_at1/1110+13454423..13455100hypothetical protein
LOC_Os10g26490OsAffx.23523.1.S1_at11/1110+13458065..13461532hypothetical protein
LOC_Os10g26490Os.45422.1.S1_x_at2/1110+13458065..13461532hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30544.1.S1_at--317--7491Chr10:13434179..13434203 (25 bp)
GTGGTACTGTGGTCAGACTAGAGTT
LOC_Os10g26440
OsAffx.30544.1.S1_at--623--3891Chr10:13434173..13434197 (25 bp)
CTGTGGTCAGACTAGAGTTGATCTT
LOC_Os10g26440
OsAffx.30544.1.S1_at--873--1391Chr10:13434165..13434189 (25 bp)
AGACTAGAGTTGATCTTGACGGTCA
LOC_Os10g26440
OsAffx.30544.1.S1_at--1110--10031Chr10:13434161..13434185 (25 bp)
TAGAGTTGATCTTGACGGTCAGACC
LOC_Os10g26440
OsAffx.30544.1.S1_at--135--1231Chr10:13434158..13434182 (25 bp)
AGTTGATCTTGACGGTCAGACCGGC
LOC_Os10g26440
OsAffx.30544.1.S1_at--708--7111Chr10:13434144..13434168 (25 bp)
GTCAGACCGGCTATGACGACAACTT
LOC_Os10g26440
OsAffx.30544.1.S1_at--68--1391Chr10:13434141..13434165 (25 bp)
AGACCGGCTATGACGACAACTTCAT
LOC_Os10g26440
OsAffx.30544.1.S1_at--802--1771Chr10:13434139..13434163 (25 bp)
ACCGGCTATGACGACAACTTCATGA
LOC_Os10g26440
OsAffx.30544.1.S1_at--38--5631NONE
GACAACTTCATGAGGTTGGCCTTTT
NONE
OsAffx.30544.1.S1_at--737--3511Chr10:13433549..13433569 (21 bp)
CATGAGGTTGGCCTTTTGCAGTTTC
LOC_Os10g26440
OsAffx.30544.1.S1_at--885--6151Chr10:13433546..13433569 (24 bp)
GAGGTTGGCCTTTTGCAGTTTCGTG
LOC_Os10g26440
Target Sequence 
GTGGTACTGTGGTCAGACTAGAGTTGATCTTGACGGTCAGACCGGCTATGACGACAACTTCATGAGGTTGGCCTTTTGCA
GTTTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis