Browse Element(s) Details


OsAffx.30568.1.S1_at

Description tigr:9638.m02395
TID=OsAffx.30568.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to zinc finger protein ID1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2833011/11Zinc finger, C2H2 type family protein
LOC_Os06g052001/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28310NANA10+14396428..14401263retrotransposon protein, putative, unclassified
LOC_Os10g28320Os.38371.1.S1_a_at10/1110+14402113..14407215Auxin-induced protein PCNT115, putative, expressed
LOC_Os10g28330OsAffx.30568.1.S1_at11/1110+14410500..14413348Zinc finger, C2H2 type family protein
LOC_Os10g28340Os.10942.1.S1_a_at11/1110+14416706..14420777HSF-type DNA-binding domain containing protein, expressed
LOC_Os10g28350Os.4766.1.S1_at10/1110+14422575..144249281,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28360Os.34459.1.S1_at11/1110+14427730..144303661,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28370OsAffx.30569.1.S1_x_at11/1110+14434249..14435588Chlorophyllase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30568.1.S1_at--1041--5171Chr10:14411056..14411080 (25 bp)
GCAATAATCTTCTGATCACCAGCAG
LOC_Os10g28330
OsAffx.30568.1.S1_at--142--8812Chr10:14410960..14410984 (25 bp)
TGTTCCTGCAACAACACCAAGCAGC
LOC_Os10g28330
OsAffx.30568.1.S1_at--607--9891Chr10:14410880..14410904 (25 bp)
TACTTCGATCACCTCGCATTCGGCG
LOC_Os10g28330
OsAffx.30568.1.S1_at--24--1872Chr10:14410822..14410846 (25 bp)
ACGACGACAATAGCTCGATCGCCGG
LOC_Os10g28330
OsAffx.30568.1.S1_at--581--6371Chr10:14410806..14410830 (25 bp)
GATCGCCGGCGATGTCATGGTGGCT
LOC_Os10g28330
OsAffx.30568.1.S1_at--864--7351Chr10:14410774..14410798 (25 bp)
GTGACAGTGTCAGCTTCGGGCTTAC
LOC_Os10g28330
OsAffx.30568.1.S1_at--1148--1511Chr10:14410763..14410787 (25 bp)
AGCTTCGGGCTTACCTCGGAAGGCT
LOC_Os10g28330
OsAffx.30568.1.S1_at--473--9431Chr10:14410748..14410772 (25 bp)
TCGGAAGGCTCCGTGACCATGCACG
LOC_Os10g28330
OsAffx.30568.1.S1_at--903--691Chr10:14410639..14410663 (25 bp)
ATGAGCTGCCGGCTGATCTGTCCAC
LOC_Os10g28330
OsAffx.30568.1.S1_at--653--4471Chr10:14410604..14410628 (25 bp)
GCCTGCCAGGGTTGCAACTTCGCCG
LOC_Os10g28330
OsAffx.30568.1.S1_at--776--5051Chr10:14410537..14410561 (25 bp)
GCAGCAGGCAGTACCTCGGCCGGCT
LOC_Os10g28330
Target Sequence 
GCAATAATCTTCTGATCACCAGCAGCAGCAGCTCACCACCACTGTTCCTGCCATTCTCCACCACTCCTGCTGAAAACCCT
AACCCTAATCAGCTCCTGTTCCTGCAACAACACCAAGCAGCTCACCACCAGCTGCTTCTTCCTCAGTTCCAGCAGCCACC
CTCCTCGCCGCCGGCCTACTTCGATCACCTCGCATTCGGCGGCGGCGGCGGCGTCATCACCGGCAGCAGCTGCAACGACG
ACAATAGCTCGATCGCCGGCGATGTCATGGTGGCTGCAGGTGGTGACAGTGTCAGCTTCGGGCTTACCTCGGAAGGCTCC
GTGACCATGCACGCCGGCGACGTCGGACGGCGCCGGCTCACTAGGGACTTCCTCGGCGTCGATCACGACGCCGGCGAGGT
CGACGAGCTCGAGCTTGATGAGCTGCCGGCTGATCTGTCCACCACCGCCGCCGCCTGCCAGGGTTGCAACTTCGCCGCCG
CCACCACCGCCGCCTGCTGCGCCACCGACTTCACCACCGGCAGCAGGCAGTACCTCGGCCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis