Browse Element(s) Details


OsAffx.30584.2.S1_at

Description tigr:9638.m02480
TID=OsAffx.30584.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2912010/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29090NANA10+14821852..14826830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29100OsAffx.20327.1.S1_at11/1110+14837382..14838491BTB/POZ domain containing protein
LOC_Os10g29110Os.46820.1.S1_at10/1110+14839923..14841488BTB/POZ domain containing protein, expressed
LOC_Os10g29120OsAffx.30584.2.S1_at10/1110+14842175..14843661BTB/POZ domain containing protein
LOC_Os10g29130OsAffx.30582.1.S1_s_at10/1110+14847117..14847476hypothetical protein
LOC_Os10g29150OsAffx.8109.1.S1_at11/1110+14853400..14854572BTB/POZ domain containing protein, expressed
LOC_Os10g29159OsAffx.10196.1.S1_x_at1/1110+14857358..14857600hypothetical protein
LOC_Os10g29170Os.46399.1.A1_at10/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170OsAffx.15781.5.S1_x_at3/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170OsAffx.15781.4.S1_x_at2/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30584.2.S1_at--368--6771Chr10:14842436..14842460 (25 bp)
GTTAAAGCCCAGTTTCAGATTTGTT
LOC_Os10g29120
OsAffx.30584.2.S1_at--911--211NONE
ATTTGTTTCGCCGATCAGAAGCTCG
NONE
OsAffx.30584.2.S1_at--162--5411Chr10:14843103..14843127 (25 bp)
GAAGCTCGGCAAACTTCTGGACACC
LOC_Os10g29120
OsAffx.30584.2.S1_at--531--4571Chr10:14843216..14843240 (25 bp)
GCGCGGAGCTCTTTGGTCCGATGAA
LOC_Os10g29120
OsAffx.30584.2.S1_at--204--2131Chr10:14843249..14843273 (25 bp)
ACAGGGCAGGCGTTGTCCGCATCGA
LOC_Os10g29120
OsAffx.30584.2.S1_at--519--10831Chr10:14843431..14843455 (25 bp)
TTGTGCAAGCACGTCGGCGTTGGCA
LOC_Os10g29120
OsAffx.30584.2.S1_at--461--6611Chr10:14843449..14843473 (25 bp)
GTTGGCACGGTGGTGAACATCCTCA
LOC_Os10g29120
OsAffx.30584.2.S1_at--911--8971Chr10:14843462..14843486 (25 bp)
TGAACATCCTCACGCTGGCTGGTCA
LOC_Os10g29120
OsAffx.30584.2.S1_at--152--9071Chr10:14843515..14843539 (25 bp)
TGCTTACATTTTCTCGGCTCACCAG
LOC_Os10g29120
OsAffx.30584.2.S1_at--904--1591Chr10:14843590..14843614 (25 bp)
AGCTGCCCCTCTCTTGTGAATGAGC
LOC_Os10g29120
OsAffx.30584.2.S1_at--415--9591Chr10:14843601..14843625 (25 bp)
TCTTGTGAATGAGCTGGTTGCCATG
LOC_Os10g29120
Target Sequence 
GTTAAAGCCCAGTTTCAGATTTGTTTCGCCGATCAGAAGCTCGGCAAACTTCTGGACACCGAGAAGGGTGCGGATGTGGT
TTTCGGGGTCGGAGGCGAGACGTTCGCCGCGCACCGGTGCGTGCTCGCTGCGCAGTCGCCGGTGTTCAGCGCGGAGCTCT
TTGGTCCGATGAAGGATAGCGACAGGGCAGGCGTTGTCCGCATCGACGACATGGAGGCGCAGGTGTTCAAGGCGTTGCTC
CGCTTCATGTACACCGACTCATTGCCGGAGATGGAGGAGGAGGAAGACACCATGTGCCAGCATCTGCTCGTCGCGGCGGA
TCGGTACAACCTGGAGAGGCTCAAGCTGATCTGCGAGGACAGATTGTGCAAGCACGTCGGCGTTGGCACGGTGGTGAACA
TCCTCACGCTGGCTGGTCAGCACCACTGCGACGGGCTGAAGAAGGCGTGCTTACATTTTCTCGGCTCACCAGCGAACCTG
AGTGCTGTCCTCGCCGGCGACGGCTTCGAGCAGCTGAGCAGGAGCTGCCCCTCTCTTGTGAATGAGCTGGTTGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30584.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis