Browse Element(s) Details


OsAffx.30617.1.S1_at

Description tigr:9638.m02653
TID=OsAffx.30617.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3082011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30770Os.46784.1.S1_x_at11/1110+15698468..15700048inorganic phosphate transporter, putative, expressed
LOC_Os10g30770Os.46784.2.S1_x_at7/1110+15698468..15700048inorganic phosphate transporter, putative, expressed
LOC_Os10g30790Os.46160.2.S1_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46160.1.S1_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46160.2.S1_x_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46784.2.S1_x_at3/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46784.1.S1_x_at1/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30800OsAffx.5031.1.S1_x_at11/1110+15711737..15715861hypothetical protein
LOC_Os10g30800OsAffx.5031.3.S1_x_at7/1110+15711737..15715861hypothetical protein
LOC_Os10g30800OsAffx.5031.2.S1_x_at5/1110+15711737..15715861hypothetical protein
LOC_Os10g30809NANA10+15718382..15719258NA
LOC_Os10g30820OsAffx.30617.1.S1_at11/1110+15722780..15723483hypothetical protein
LOC_Os10g30826OsAffx.19542.3.S1_x_at5/1110+15725902..15727677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30832NANA10+15728699..15729751retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30840NANA10+15734459..15734833AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30617.1.S1_at--937--2811Chr10:15723390..15723414 (25 bp)
AAGATTGCAACCTCTTCTAGCTCTT
LOC_Os10g30820
OsAffx.30617.1.S1_at--213--8871Chr10:15723301..15723325 (25 bp)
TGATGATGAAGCTCCTGTGCCCGAA
LOC_Os10g30820
OsAffx.30617.1.S1_at--35--9411Chr10:15723241..15723265 (25 bp)
TCGTCTTGAAAGTGATCCAGGCCTA
LOC_Os10g30820
OsAffx.30617.1.S1_at--751--8411Chr10:15723222..15723246 (25 bp)
GGCCTAAGACTTCCAATTTCGAGCT
LOC_Os10g30820
OsAffx.30617.1.S1_at--123--5911Chr10:15723202..15723226 (25 bp)
GAGCTATCCGGCCAATGACCAAGAT
LOC_Os10g30820
OsAffx.30617.1.S1_at--938--5851Chr10:15723186..15723210 (25 bp)
GACCAAGATTCTGTTCGGAGAGCAT
LOC_Os10g30820
OsAffx.30617.1.S1_at--68--1532Chr10:15723166..15723190 (25 bp)
AGCATATATTCTCAAGGGCCCTTGG
LOC_Os10g30820
OsAffx.30617.1.S1_at--394--7571Chr10:15723151..15723175 (25 bp)
GGGCCCTTGGCAAAAGTACTCACAT
LOC_Os10g30820
OsAffx.30617.1.S1_at--101--1791Chr10:15722969..15722993 (25 bp)
AAAAATTCCTGGCTACGTCACTGAC
LOC_Os10g30820
OsAffx.30617.1.S1_at--26--7111Chr10:15722953..15722977 (25 bp)
GTCACTGACAGCAAGTCGCCCGGAA
LOC_Os10g30820
OsAffx.30617.1.S1_at--817--4533Chr05:206775..206804 (24 bp)
GCCCGGAAAAGCTAATGCGCGCGTA
NONE
Target Sequence 
AAGATTGCAACCTCTTCTAGCTCTTCGAATGGCTTCATTGGTGATGAAGCTCCTGTACCTGAAGAAGAACCACCACAAGC
TCCAACAATTGATGATGAAGCTCCTGTGCCCGAAGTCAATGCACCTCATTATCCTATTTATGATGTTAATCGTCTTGAAA
GTGATCCAGGCCTAAGACTTCCAATTTCGAGCTATCCGGCCAATGACCAAGATTCTGTTCGGAGAGCATATATTCTCAAG
GGCCCTTGGCAAAAGTACTCACATCAATTCCCAGCCAAAAATATATATGGACTACTCGAGGAAAAATTCCTGGCTACGTC
ACTGACAGCAAGTCGCCCGGAAAAGCTAATGCGCGCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis