Browse Element(s) Details


OsAffx.30633.1.S1_at

Description gb:NM_196845.1
DB_XREF= gi:37535049
TID=OsAffx.30633.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0011A08.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3209011/11hypothetical protein
LOC_Os05g019301/11hypothetical protein
LOC_Os10g264801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32030OsAffx.30631.1.S1_at11/1110+16497198..16502018AT hook motif-containing protein, putative
LOC_Os10g32040OsAffx.20283.1.S1_at10/1110+16505082..16506294hypothetical protein
LOC_Os10g32050OsAffx.30632.1.S1_at11/1110+16506527..16507545hypothetical protein
LOC_Os10g32060Os.4071.2.S1_x_at11/1110+16510636..16516402retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g32070OsAffx.20281.1.S1_at11/1110+16518014..16519760GATA zinc finger family protein
LOC_Os10g32080OsAffx.18485.3.S1_at11/1110+16522643..16524163Exostosin family protein
LOC_Os10g32090OsAffx.30633.1.S1_at11/1110+16524730..16525308hypothetical protein
LOC_Os10g32100NANA10+16527337..16527957hypothetical protein
LOC_Os10g32110OsAffx.8050.1.S1_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110OsAffx.8050.1.S1_x_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110Os.46796.2.S1_x_at1/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32124OsAffx.32166.1218.S1_x_at10/1110+16544822..16553037retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30633.1.S1_at--282--1151Chr10:16524831..16524855 (25 bp)
AGTCGCTGCCACTCCCGAGGCGGGA
LOC_Os10g32090
OsAffx.30633.1.S1_at--501--7851Chr10:16524928..16524952 (25 bp)
GGTAGCCACTATGGGTTCCTTGGCC
LOC_Os10g32090
OsAffx.30633.1.S1_at--530--2033Chr10:16524935..16524959 (25 bp)
ACTATGGGTTCCTTGGCCTCACCAA
LOC_Os10g32090
OsAffx.30633.1.S1_at--141--3911Chr10:16525006..16525030 (25 bp)
CTGGATGCAGTGAAGCAGCGCGTCT
LOC_Os10g32090
OsAffx.30633.1.S1_at--680--4611Chr10:16525039..16525063 (25 bp)
GCGAGCTTGTCATCGCCGTCGCAGA
LOC_Os10g32090
OsAffx.30633.1.S1_at--753--3251Chr10:16525060..16525084 (25 bp)
CAGACGCCGTTGTCGGACCCTAGGG
LOC_Os10g32090
OsAffx.30633.1.S1_at--811--4531Chr10:16525095..16525119 (25 bp)
GCCCTCGATGAACGCCACGGAGTCG
LOC_Os10g32090
OsAffx.30633.1.S1_at--1115--1891Chr10:16525111..16525135 (25 bp)
ACGGAGTCGCTCAAAAACCAGCATT
LOC_Os10g32090
OsAffx.30633.1.S1_at--443--9711Chr10:16525121..16525145 (25 bp)
TCAAAAACCAGCATTGCGTGCCCCA
LOC_Os10g32090
OsAffx.30633.1.S1_at--1139--10611Chr10:16525196..16525220 (25 bp)
TTCGACGTCAACAACATCCGATCCA
LOC_Os10g32090
OsAffx.30633.1.S1_at--230--2031Chr10:16525220..16525244 (25 bp)
ACTACTGCCGTCACCACTGTGGAAG
LOC_Os10g32090
Target Sequence 
AGTCGCTGCCACTCCCGAGGCGGGAGCCGCCTCCACCTCCGCCTCTGCCTCCACCTCCACCTCCTTCTCACCCGGCGCCG
CGGTGAAGAGAGTGATTGGTAGCCACTATGGGTTCCTTGGCCTCACCAACGCCTCCCTCAACGGCAACGCCACCAACAGG
TTCGTGGGCGTGGAGCTGGATGCAGTGAAGCAGCGCGTCTGCGTCGCGGCGAGCTTGTCATCGCCGTCGCAGACGCCGTT
GTCGGACCCTAGGGCCGACGACCCGCCCTCGATGAACGCCACGGAGTCGCTCAAAAACCAGCATTGCGTGCCCCACCTTG
AACTCGGCGAACTCATCCGTCCATGCCGCGTCCCCGGCGCTGGCCTTCGACGTCAACAACATCCGATCCACTACTGCCGT
CACCACTGTGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis