Browse Element(s) Details


OsAffx.30652.1.S1_x_at

Description gb:NM_196974.1
DB_XREF= gi:37535307
TID=OsAffx.30652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0001K12.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3341011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33370Os.10251.1.S1_at11/1110+17234777..17242065beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os10g33390OsAffx.30651.1.S1_at11/1110+17242773..17244371hypothetical protein
LOC_Os10g33380NANA10+17245001..17246559transposon protein, putative, unclassified
LOC_Os10g33400OsAffx.8028.1.S1_x_at11/1110+17248667..17249263hypothetical protein
LOC_Os10g33410OsAffx.30652.1.S1_x_at11/1110+17251633..17252798hypothetical protein
LOC_Os10g33410Os.54461.1.S1_at11/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.1.S1_at9/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.2.S1_x_at9/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.2.S1_at6/1110+17251633..17252798hypothetical protein
LOC_Os10g33420Os.22652.2.S1_x_at11/1110+17255157..17263307expressed protein
LOC_Os10g33420Os.22652.1.S1_at11/1110+17255157..17263307expressed protein
LOC_Os10g33430NANA10+17271928..17272161hypothetical protein
LOC_Os10g33440OsAffx.18502.1.S1_at11/1110+17277212..17283556NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30652.1.S1_x_at--481--10053Chr10:17251683..17251707 (25 bp)
TAGGACGGCCCGGAGGAGAATATTC
LOC_Os10g33410
OsAffx.30652.1.S1_x_at--1075--6171Chr10:17251695..17251719 (25 bp)
GAGGAGAATATTCCCCCAGATGCAG
LOC_Os10g33410
OsAffx.30652.1.S1_x_at--648--651Chr10:17251714..17251738 (25 bp)
ATGCAGCCGCCCAAGGCTCGGGCGA
LOC_Os10g33410
OsAffx.30652.1.S1_x_at--841--4591Chr10:17251735..17251759 (25 bp)
GCGAGCCGGGCGAGCGACCAAAGGA
LOC_Os10g33410
OsAffx.30652.1.S1_x_at--49--4591Chr10:17251748..17251772 (25 bp)
GCGACCAAAGGAGGGTCGCGTCACC
LOC_Os10g33410
OsAffx.30652.1.S1_x_at--564--2353Chr10:17251781..17251805 (25 bp)
AAAGCGAGAACGACGGCGACGCAGC
LOC_Os10g33410
OsAffx.30652.1.S1_x_at--131--4691Chr10:17252662..17252686 (25 bp)
GCGGCGATAGCCGTTGGTTCGTCCT
LOC_Os10g33410
OsAffx.30652.1.S1_x_at--292--311Chr10:17252668..17252692 (25 bp)
ATAGCCGTTGGTTCGTCCTTGCCGG
LOC_Os10g33410
OsAffx.30652.1.S1_x_at--260--9251Chr10:17252683..17252707 (25 bp)
TCCTTGCCGGCGAGTTCAGGCGAGC
LOC_Os10g33410
OsAffx.30652.1.S1_x_at--1091--4613Chr10:17252692..17252716 (25 bp)
GCGAGTTCAGGCGAGCACCACAAGC
LOC_Os10g33410
OsAffx.30652.1.S1_x_at--775--4074Chr10:17252703..17252727 (25 bp)
CGAGCACCACAAGCCGACGGTGGAA
LOC_Os10g33410
Target Sequence 
TAGGACGGCCCGGAGGAGAATATTCCCCCAGATGCAGCCGCCCAAGGCTCGGGCGAGCCGGGCGAGCGACCAAAGGAGGG
TCGCGTCACCCCTCTCCAAAAGCGAGAACGACGGCGACGCAGCGGCTGAAGGCGGCGATAGCCGTTGGTTCGTCCTTGCC
GGCGAGTTCAGGCGAGCACCACAAGCCGACGGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30652.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis