Browse Element(s) Details


OsAffx.30677.4.S1_x_at

Description tigr:9633.m01143
TID=OsAffx.30677.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1278011/11hAT family dimerisation domain containing protein
LOC_Os03g158308/11hypothetical protein
LOC_Os06g377607/11hAT family dimerisation domain containing protein
LOC_Os08g302706/11hAT family dimerisation domain containing protein
LOC_Os04g296304/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12730NANA5+7285125..7287154hypothetical protein
LOC_Os05g12740NANA5+7287485..7290549transposon protein, putative, Mutator sub-class
LOC_Os05g12750NANA5+7299277..7301412retrotransposon protein, putative, LINE subclass
LOC_Os05g12760NANA5+7301731..7303437retrotransposon protein, putative, unclassified
LOC_Os05g12770OsAffx.4318.1.S1_at11/115+7304979..7309611NB-ARC domain containing protein
LOC_Os05g12780OsAffx.30677.4.S1_x_at11/115+7311464..7314448hAT family dimerisation domain containing protein
LOC_Os05g12780OsAffx.30677.3.S1_x_at8/115+7311464..7314448hAT family dimerisation domain containing protein
LOC_Os05g12790OsAffx.4320.1.S1_at11/115+7318636..7319022hypothetical protein
LOC_Os05g12800OsAffx.4321.1.S1_at11/115+7320418..7320684hypothetical protein
LOC_Os05g12804NANA5+7328674..7331071transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12808NANA5+7336097..7336984uncharacterized plant-specific domain TIGR01568 family protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30677.4.S1_x_at--1147--5492Chr03:8714375..8714399 (25 bp)
GAACACATGCTTTCACATTCTCGTG
LOC_Os03g15830
OsAffx.30677.4.S1_x_at--594--7415Chr03:8714412..8714436 (25 bp)
GTGTTGGATCACCTGTTCTTGGGAA
LOC_Os03g15830
OsAffx.30677.4.S1_x_at--646--1334Chr03:8714452..8714476 (25 bp)
AGAGTTTGCTTTATACAAGTCTCGA
LOC_Os03g15830
OsAffx.30677.4.S1_x_at--294--7172Chr03:8714470..8714494 (25 bp)
GTCTCGAAGGAGGACTGCACGGCAA
LOC_Os03g15830
OsAffx.30677.4.S1_x_at--276--1413Chr08:18487022..18487046 (25 bp)
AGACATGCTCAAAAATTCCCGGTAT
LOC_Os08g30270
OsAffx.30677.4.S1_x_at--557--3153Chr03:8714589..8714613 (25 bp)
AATTCCCGGTATTGTCATCTATGGC
LOC_Os03g15830
OsAffx.30677.4.S1_x_at--1024--8433Chr08:18486987..18487011 (25 bp)
GGCCAGAGATTTCCTAGCAATACCC
LOC_Os08g30270
OsAffx.30677.4.S1_x_at--158--3751Chr05:7311695..7311719 (25 bp)
CTCAGCACTGTATCTTCCGAATTAG
LOC_Os05g12780
OsAffx.30677.4.S1_x_at--719--8275Chr03:8714675..8714699 (25 bp)
GGCAGGATACTTGGTGACACACGAA
LOC_Os03g15830
OsAffx.30677.4.S1_x_at--333--6714Chr03:8714700..8714724 (25 bp)
GTTCGTTAACACCTGAAATGCTTGA
LOC_Os03g15830
OsAffx.30677.4.S1_x_at--381--4934Chr03:8714719..8714743 (25 bp)
GCTTGAAGCTCTCATTTGTGCGAAA
LOC_Os03g15830
Target Sequence 
GAACACATGCTTTCACATTCTCGTGAAGGCAGCAGCAGTGTTGGATCACCTGTTCTTGGGAAAAGAAAACTCGAGGAAGA
GTTTGCTTTATACAAGTCTCGAAGGAGGACTGCACGGCAAACGAAATCAGAATTTGCCATATATTTAGAAGAAGATGTTG
AGGAGGATAGTGAGAGTTTCGATGTTTTGGACTGGTGGAAGAGACATGCTCAAAAATTCCCGGTATTGTCATCTATGGCC
AGAGATTTCCTAGCAATACCCCTCAGCACTGTATCTTCCGAATTAGCATTCAGTTGTGGGGGCAGGATACTTGGTGACAC
ACGAAGTTCGTTAACACCTGAAATGCTTGAAGCTCTCATTTGTGCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30677.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis