Browse Element(s) Details


OsAffx.4320.1.S1_at

Description tigr:9633.m01144
TID=OsAffx.4320.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1279011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12750NANA5+7299277..7301412retrotransposon protein, putative, LINE subclass
LOC_Os05g12760NANA5+7301731..7303437retrotransposon protein, putative, unclassified
LOC_Os05g12770OsAffx.4318.1.S1_at11/115+7304979..7309611NB-ARC domain containing protein
LOC_Os05g12780OsAffx.30677.4.S1_x_at11/115+7311464..7314448hAT family dimerisation domain containing protein
LOC_Os05g12780OsAffx.30677.3.S1_x_at8/115+7311464..7314448hAT family dimerisation domain containing protein
LOC_Os05g12790OsAffx.4320.1.S1_at11/115+7318636..7319022hypothetical protein
LOC_Os05g12800OsAffx.4321.1.S1_at11/115+7320418..7320684hypothetical protein
LOC_Os05g12804NANA5+7328674..7331071transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12808NANA5+7336097..7336984uncharacterized plant-specific domain TIGR01568 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4320.1.S1_at--132--7611Chr05:7318950..7318974 (25 bp)
GGGCAAGCGGAAGGCGGTGCTCAGC
LOC_Os05g12790
OsAffx.4320.1.S1_at--529--6031Chr05:7318918..7318942 (25 bp)
GAGATCCCCGAGTGCAGGAGAGGTC
LOC_Os05g12790
OsAffx.4320.1.S1_at--460--4551Chr05:7318851..7318875 (25 bp)
GCCCAAGACAAGACCGAGGCGGAGC
LOC_Os05g12790
OsAffx.4320.1.S1_at--988--4351Chr05:7318820..7318844 (25 bp)
CCAACTTCGACGTTGGCTGGGACGG
LOC_Os05g12790
OsAffx.4320.1.S1_at--1048--3891Chr05:7318804..7318828 (25 bp)
CTGGGACGGGCTTGACCCTAGCGCC
LOC_Os05g12790
OsAffx.4320.1.S1_at--139--4191Chr05:7318789..7318813 (25 bp)
CCCTAGCGCCGGCAAGCAAGAGAGA
LOC_Os05g12790
OsAffx.4320.1.S1_at--953--1311Chr05:7318758..7318782 (25 bp)
AGATGGAGACGGTCGCTGCTCTCCC
LOC_Os05g12790
OsAffx.4320.1.S1_at--1025--6251Chr05:7318686..7318710 (25 bp)
GATGGGATCGCCGTCATTGTTGCAT
LOC_Os05g12790
OsAffx.4320.1.S1_at--815--7651Chr05:7318683..7318707 (25 bp)
GGGATCGCCGTCATTGTTGCATCGG
LOC_Os05g12790
OsAffx.4320.1.S1_at--326--9331Chr05:7318679..7318703 (25 bp)
TCGCCGTCATTGTTGCATCGGCCGA
LOC_Os05g12790
OsAffx.4320.1.S1_at--751--10711Chr05:7318667..7318691 (25 bp)
TTGCATCGGCCGACGCCGCGTGTTC
LOC_Os05g12790
Target Sequence 
GGGCAAGCGGAAGGCGGTGCTCAGCCTCTCGCGAGATCCCCGAGTGCAGGAGAGGTCGACGGCGGAGATGGATGGCGCGG
CGAGGGTGTCGCCGCCGCCGCCCAAGACAAGACCGAGGCGGAGCGCGCCCCCAACTTCGACGTTGGCTGGGACGGGCTTG
ACCCTAGCGCCGGCAAGCAAGAGAGAGGGAAGAGATGGAGACGGTCGCTGCTCTCCCTCGCTAGCAGCATCAACGAGCGG
CGGCGGCAGGAGAGGAGGGAAAGAGATGGGATCGCCGTCATTGTTGCATCGGCCGACGCCGCGTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis