Browse Element(s) Details


OsAffx.4318.1.S1_at

Description tigr:9633.m01142
TID=OsAffx.4318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1277011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12720OsAffx.20017.1.S1_at5/115+7283836..7284738hypothetical protein
LOC_Os05g12730NANA5+7285125..7287154hypothetical protein
LOC_Os05g12740NANA5+7287485..7290549transposon protein, putative, Mutator sub-class
LOC_Os05g12750NANA5+7299277..7301412retrotransposon protein, putative, LINE subclass
LOC_Os05g12760NANA5+7301731..7303437retrotransposon protein, putative, unclassified
LOC_Os05g12770OsAffx.4318.1.S1_at11/115+7304979..7309611NB-ARC domain containing protein
LOC_Os05g12780OsAffx.30677.4.S1_x_at11/115+7311464..7314448hAT family dimerisation domain containing protein
LOC_Os05g12780OsAffx.30677.3.S1_x_at8/115+7311464..7314448hAT family dimerisation domain containing protein
LOC_Os05g12790OsAffx.4320.1.S1_at11/115+7318636..7319022hypothetical protein
LOC_Os05g12800OsAffx.4321.1.S1_at11/115+7320418..7320684hypothetical protein
LOC_Os05g12804NANA5+7328674..7331071transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4318.1.S1_at--858--4311Chr05:7305536..7305560 (25 bp)
CCTTCCCTTGTTAATCTTCAGCTGA
LOC_Os05g12770
OsAffx.4318.1.S1_at--1022--5991Chr05:7305492..7305516 (25 bp)
GAGAGTCACCAATAACCCAAGCTTG
LOC_Os05g12770
OsAffx.4318.1.S1_at--617--2251Chr05:7305465..7305489 (25 bp)
AAATATTTACATCTGGGAGTGCCCA
LOC_Os05g12770
OsAffx.4318.1.S1_at--1021--6591Chr05:7305313..7305337 (25 bp)
GATTGTTCGGACTGATATCCTTACA
LOC_Os05g12770
OsAffx.4318.1.S1_at--646--551Chr05:7305297..7305321 (25 bp)
ATCCTTACAAGATACCACCTCTGAG
LOC_Os05g12770
OsAffx.4318.1.S1_at--905--6471Chr05:7305264..7305288 (25 bp)
GATACAGCATGTCTCGCAACTAAAG
LOC_Os05g12770
OsAffx.4318.1.S1_at--897--8271Chr05:7305240..7305264 (25 bp)
GGCATATGGATGCACTTTACGGATA
LOC_Os05g12770
OsAffx.4318.1.S1_at--6--10611Chr05:7305146..7305170 (25 bp)
TTCGGATATGTCTCCTACACTAAGG
LOC_Os05g12770
OsAffx.4318.1.S1_at--1145--8171Chr05:7305123..7305147 (25 bp)
GGAACCCTACTCCTTTGAGACAAGG
LOC_Os05g12770
OsAffx.4318.1.S1_at--121--1031Chr05:7305071..7305095 (25 bp)
AGGTACATGGCTTCAATTGCTTTGA
LOC_Os05g12770
OsAffx.4318.1.S1_at--1034--2731Chr05:7305009..7305033 (25 bp)
AAGAATGTGCCCTGCTGTACTTAAT
LOC_Os05g12770
Target Sequence 
CCTTCCCTTGTTAATCTTCAGCTGATTGAAAACCCAAAACTAGAGAGAGTCACCAATAACCCAAGCTTGAAAAATATTTA
CATCTGGGAGTGCCCAGCGCTAAAGGTGCTGGAAGAATTGCCATTACTGAATAGCATATACTGGTGGGATTTGAAAGCAG
AAAAACTCCCAGAATGCTTTGGAGTACCAATGTTAAAGAAGCTATTTGTACATTGCAACAGAAGATTGTTCGGACTGATA
TCCTTACAAGATACCACCTCTGAGTGGGGAAAGATACAGCATGTCTCGCAACTAAAGGCATATGGATGCACTTTACGGAT
AGATTTATCTGGATACACTCTACCAACAGGGTTATCTGGATATAATTTTCTAAGAGAAGTAATAGATTTATTCGGATATG
TCTCCTACACTAAGGAACCCTACTCCTTTGAGACAAGGACCTATGAGACCTCAGAGCAAGCCCAAAGGTACATGGCTTCA
ATTGCTTTGATCTTTCAAATTTCTGTTCATGCTATTCAACTTCGTTTAAGAATGTGCCCTGCTGTACTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis