Browse Element(s) Details


OsAffx.4321.1.S1_at

Description tigr:9633.m01145
TID=OsAffx.4321.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1280011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12750NANA5+7299277..7301412retrotransposon protein, putative, LINE subclass
LOC_Os05g12760NANA5+7301731..7303437retrotransposon protein, putative, unclassified
LOC_Os05g12770OsAffx.4318.1.S1_at11/115+7304979..7309611NB-ARC domain containing protein
LOC_Os05g12780OsAffx.30677.4.S1_x_at11/115+7311464..7314448hAT family dimerisation domain containing protein
LOC_Os05g12780OsAffx.30677.3.S1_x_at8/115+7311464..7314448hAT family dimerisation domain containing protein
LOC_Os05g12790OsAffx.4320.1.S1_at11/115+7318636..7319022hypothetical protein
LOC_Os05g12800OsAffx.4321.1.S1_at11/115+7320418..7320684hypothetical protein
LOC_Os05g12804NANA5+7328674..7331071transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12808NANA5+7336097..7336984uncharacterized plant-specific domain TIGR01568 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4321.1.S1_at--200--3791Chr05:7320606..7320630 (25 bp)
CTCGCATCGCAACCGCGGCATTGGT
LOC_Os05g12800
OsAffx.4321.1.S1_at--288--3991Chr05:7320556..7320580 (25 bp)
CGGGCAGCGTTGCTCTGATCTATGT
LOC_Os05g12800
OsAffx.4321.1.S1_at--585--5071Chr05:7320553..7320577 (25 bp)
GCAGCGTTGCTCTGATCTATGTCAG
LOC_Os05g12800
OsAffx.4321.1.S1_at--1152--6651Chr05:7320548..7320572 (25 bp)
GTTGCTCTGATCTATGTCAGCCGGC
LOC_Os05g12800
OsAffx.4321.1.S1_at--305--8851Chr05:7320541..7320565 (25 bp)
TGATCTATGTCAGCCGGCGCGCGGC
LOC_Os05g12800
OsAffx.4321.1.S1_at--855--3771Chr05:7320516..7320540 (25 bp)
CTCTGCACATGCATCAAGCCGAGTG
LOC_Os05g12800
OsAffx.4321.1.S1_at--564--5111Chr05:7320512..7320536 (25 bp)
GCACATGCATCAAGCCGAGTGAGCA
LOC_Os05g12800
OsAffx.4321.1.S1_at--570--9711Chr05:7320503..7320527 (25 bp)
TCAAGCCGAGTGAGCAGAGAGTCAG
LOC_Os05g12800
OsAffx.4321.1.S1_at--157--1351Chr05:7320486..7320510 (25 bp)
AGAGTCAGGGAAGCAGGCAAGCATC
LOC_Os05g12800
OsAffx.4321.1.S1_at--67--5011Chr05:7320474..7320498 (25 bp)
GCAGGCAAGCATCCAGGCACCGCGC
LOC_Os05g12800
OsAffx.4321.1.S1_at--773--8251Chr05:7320459..7320483 (25 bp)
GGCACCGCGCGCTACAGGAAGAAGA
LOC_Os05g12800
Target Sequence 
CTCGCATCGCAACCGCGGCATTGGTCGGCCGGGCTCGCGGCACGGGCAGTCGGGCAGCGTTGCTCTGATCTATGTCAGCC
GGCGCGCGGCCTCTGCACATGCATCAAGCCGAGTGAGCAGAGAGTCAGGGAAGCAGGCAAGCATCCAGGCACCGCGCGCT
ACAGGAAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis