Browse Element(s) Details


OsAffx.30677.5.S1_x_at

Description tigr:9633.m03196
TID=OsAffx.30677.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3449011/11hypothetical protein
LOC_Os10g351609/11hypothetical protein
LOC_Os06g377904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34460Os.7315.2.S1_x_at11/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34460Os.7315.1.S1_at10/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34470Os.13995.1.S1_at11/115+20355189..20357037expressed protein
LOC_Os05g34480Os.53543.1.A1_at11/115+20359578..20362920expressed protein
LOC_Os05g34490OsAffx.30677.5.S1_x_at11/115+20365054..20367044hypothetical protein
LOC_Os05g34490OsAffx.30677.1.S1_x_at5/115+20365054..20367044hypothetical protein
LOC_Os05g34500Os.52658.1.S1_at11/115+20372362..20373077expressed protein
LOC_Os05g34510OsAffx.27159.1.S1_at10/115+20374231..20375850hypothetical protein
LOC_Os05g34510Os.19995.1.S1_at1/115+20374231..20375850hypothetical protein
LOC_Os05g34520OsAffx.27160.1.S1_at11/115+20378572..20384642Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os05g34530NANA5+20387983..20388291hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30677.5.S1_x_at--1132--7812Chr10:18441606..18441630 (25 bp)
GGTCAGTTGTTTAACTGTCCAGCGG
LOC_Os10g35160
OsAffx.30677.5.S1_x_at--940--192Chr10:18441479..18441503 (25 bp)
ATTTCTGTGAGAACAATCCTAGTGA
LOC_Os10g35160
OsAffx.30677.5.S1_x_at--370--573Chr10:18441464..18441488 (25 bp)
ATCCTAGTGATGGTAGTGCTGCAGC
LOC_Os10g35160
OsAffx.30677.5.S1_x_at--847--5151Chr05:20365434..20365458 (25 bp)
GCAAGGTTTTCCATTGATACCGGGA
LOC_Os05g34490
OsAffx.30677.5.S1_x_at--820--6472Chr10:18441426..18441604 (25 bp)
GATACCGGGACAGATTCAGAGATGA
LOC_Os10g35160
OsAffx.30677.5.S1_x_at--872--1331Chr05:20365336..20365360 (25 bp)
AGAGGGATGCCCAATACGCCACTTG
LOC_Os05g34490
OsAffx.30677.5.S1_x_at--487--313Chr10:18441330..18441354 (25 bp)
ATACGCCACTTGTTACTAGGTGATA
LOC_Os10g35160
OsAffx.30677.5.S1_x_at--1097--3712Chr10:18441234..18441258 (25 bp)
CTACAGGTGAGCAATTCCAAGGAAA
LOC_Os10g35160
OsAffx.30677.5.S1_x_at--60--5893Chr10:18441204..18441228 (25 bp)
GAGCTACAGGTACCATGGGATCCAG
LOC_Os10g35160
OsAffx.30677.5.S1_x_at--873--573Chr10:18441185..18441209 (25 bp)
ATCCAGGAGGTTTTCTTCATCGGCT
LOC_Os10g35160
OsAffx.30677.5.S1_x_at--450--3733Chr10:18443647..18443671 (25 bp)
CTACACCACGGGTTGGTCAGCCCAT
NONE
Target Sequence 
GGTCAGTTGTTTAACTGTCCAGCGGGGATACATTTTGGGGTCAGAAGGATTTCTGGGATTATTGCTAGAGGTGCTGATGA
GAATCAGAACAGGAAGGTCAAGACATGTGGTTATGATTCCATTTTTGATTTCTGTGAGAACAATCCTAGTGATGGTAGTG
CTGCAGCAAGGTTTTCCATTGATACCGGGACAGATTCAGAGATGATATATACATCAATTGCAAACAGGGATTATTGGTCT
GTTAAATTATTGGAGGTCATAAAAGAGGGATGCCCAATACGCCACTTGTTACTAGGTGATATCAAGAAAGAACAATTGCT
GCAATGTGAGACATTCAATACAACACAGACAAATACAGAGCAAGTTATCAAGCTACAGGTGAGCAATTCCAAGGAAATAC
AAGAGCTACAGGTACCATGGGATCCAGGAGGTTTTCTTCATCGGCTTGGGGACAAGCCAAATTTCAAGAAGAGGGGATTG
TCAGGGGCTCGGGTGGGCAGCACATGGGCCGCTGGCTACACCACGGGTTGGTCAGCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30677.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis