Browse Element(s) Details


OsAffx.30680.2.S1_at

Description tigr:9638.m03179
TID=OsAffx.30680.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g358309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35770Os.7675.1.S1_at11/1110+18800270..18803895expressed protein
LOC_Os10g35770Os.21300.2.S1_x_at1/1110+18800270..18803895expressed protein
LOC_Os10g35780OsAffx.18527.1.S1_at10/1110+18805819..18806873hypothetical protein
LOC_Os10g35790Os.46127.1.S1_x_at2/1110+18812615..18813979Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35800Os.16692.2.S1_at11/1110+18816916..18818979expressed protein
LOC_Os10g35800OsAffx.26828.1.S1_x_at1/1110+18816916..18818979expressed protein
LOC_Os10g35810OsAffx.18528.1.S1_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35810Os.16692.1.S1_x_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35820Os.7563.1.S1_at11/1110+18822696..18823361expressed protein
LOC_Os10g35830OsAffx.30680.1.S1_at11/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.1.S1_x_at10/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.2.S1_at9/1110+18824973..18826935hypothetical protein
LOC_Os10g35840Os.11129.1.S1_at11/1110+18829486..18832897Glutamyl-tRNA reductase, chloroplast precursor, putative, expressed
LOC_Os10g35850Os.4688.1.S1_at11/1110+18836717..18839202Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os10g35870Os.4609.1.S1_a_at11/1110+18842149..18844448Membrane steroid binding protein 1, putative, expressed
LOC_Os10g35880NANA10+18847579..18853656hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30680.2.S1_at--345--4091NONE
CGAAAGGCGGGCAGTACAATCCAAG
NONE
OsAffx.30680.2.S1_at--698--6811NONE
GTTTAGTCAGAGCTTGCTGGTTTCA
NONE
OsAffx.30680.2.S1_at--209--5931Chr10:18825159..18825183 (25 bp)
GAGCTTGCTGGTTTCAGCCATGGAA
LOC_Os10g35830
OsAffx.30680.2.S1_at--297--951Chr10:18825122..18825146 (25 bp)
AGGACAAAGAAGACGATCACTCAGA
LOC_Os10g35830
OsAffx.30680.2.S1_at--352--1891Chr10:18825110..18825134 (25 bp)
ACGATCACTCAGAGGCGTCTTCAGA
LOC_Os10g35830
OsAffx.30680.2.S1_at--807--2011Chr10:18825104..18825128 (25 bp)
ACTCAGAGGCGTCTTCAGAGGAGCA
LOC_Os10g35830
OsAffx.30680.2.S1_at--511--2791Chr10:18825058..18825082 (25 bp)
AAGAGGACGGCCTTTTGTCAGTGCT
LOC_Os10g35830
OsAffx.30680.2.S1_at--1081--5731Chr10:18825053..18825077 (25 bp)
GACGGCCTTTTGTCAGTGCTCCCAG
LOC_Os10g35830
OsAffx.30680.2.S1_at--295--1651Chr10:18825030..18825054 (25 bp)
AGCCCGGCGTATGAAGCTTCCGACA
LOC_Os10g35830
OsAffx.30680.2.S1_at--201--10131Chr10:18825021..18825045 (25 bp)
TATGAAGCTTCCGACAGGCCAGTGC
LOC_Os10g35830
OsAffx.30680.2.S1_at--172--891Chr10:18825006..18825030 (25 bp)
AGGCCAGTGCCTCAAGGCTCGAATC
LOC_Os10g35830
Target Sequence 
CGAAAGGCGGGCAGTACAATCCAAGTTATCAGAACTTCAAAATTGTGGATCCCAAAGTCTTCATGGCAGCTCAGACTTTA
GAACTTCAAAGCAGGACTACTCGTATATCATCCAAATGCATGTCATTGTTTAGTCAGAGCTTGCTGGTTTCAGCCATGGA
AGGAGAGTTATGGAGGACAAAGAAGACGATCACTCAGAGGCGTCTTCAGAGGAGCAGCTCTACGAGTTGCCAAGAACAAG
AGGACGGCCTTTTGTCAGTGCTCCCAGCCCGGCGTATGAAGCTTCCGACAGGCCAGTGCCTCAAGGCTCGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30680.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis