Browse Element(s) Details


OsAffx.30685.1.S1_x_at

Description tigr:9638.m03206
TID=OsAffx.30685.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g360602/11Chorion family 2 protein, expressed
LOC_Os01g030201/11Leucyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36010OsAffx.30684.1.S1_at9/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12308.1.S1_at3/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12912.1.S1_at2/1110+18922180..18923069hypothetical protein
LOC_Os10g36020OsAffx.20220.1.S1_at1/1110+18925505..18925774hypothetical protein
LOC_Os10g36030Os.46792.1.S1_at11/1110+18926092..18928539Cytochrome b561 family protein, expressed
LOC_Os10g36050Os.46497.2.S1_at11/1110+18932862..18934452hypothetical protein
LOC_Os10g36050Os.46497.2.S1_x_at10/1110+18932862..18934452hypothetical protein
LOC_Os10g36060Os.2611.1.S1_a_at10/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36060OsAffx.31528.1.S1_x_at3/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36060OsAffx.30685.1.S1_x_at2/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36070Os.46576.2.S1_x_at11/1110+18958410..18958712Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36070Os.46576.1.S1_x_at2/1110+18958410..18958712Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36090Os.46576.2.S1_x_at11/1110+18969981..18970283Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36090Os.46576.1.S1_x_at3/1110+18969981..18970283Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36100Os.46576.2.S1_x_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36100Os.46576.1.S1_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36100Os.46576.1.S1_x_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30685.1.S1_x_at--566--952Chr10:18959938..18959962 (25 bp)
AGGACAATATCTAGGTGCTCTGCAG
NONE
OsAffx.30685.1.S1_x_at--925--3091Chr10:18959943..18959967 (25 bp)
AATATCTAGGTGCTCTGCAGAGGAC
NONE
OsAffx.30685.1.S1_x_at--435--452Chr10:18959946..18959970 (25 bp)
ATCTAGGTGCTCTGCAGAGGACACA
NONE
OsAffx.30685.1.S1_x_at--211--1331NONE
AGAGGACACAGGTACCCAGTGGCTC
NONE
OsAffx.30685.1.S1_x_at--687--951NONE
AGGACACAGGTACCCAGTGGCTCTC
NONE
OsAffx.30685.1.S1_x_at--939--2171NONE
ACACAGGTACCCAGTGGCTCTCCTT
NONE
OsAffx.30685.1.S1_x_at--984--7753Chr10:18962309..18962333 (25 bp)
GGTGACGGCGCCCTCTCAACGGCGG
NONE
OsAffx.30685.1.S1_x_at--818--1931Chr10:18962339..18962363 (25 bp)
ACGGCAACGACAGCGTCGGCGTCGT
NONE
OsAffx.30685.1.S1_x_at--631--3251Chr10:18962343..18962367 (25 bp)
CAACGACAGCGTCGGCGTCGTCTGA
NONE
OsAffx.30685.1.S1_x_at--530--8371Chr10:18962356..18962380 (25 bp)
GGCGTCGTCTGAGGGTGGATCCGTC
NONE
OsAffx.30685.1.S1_x_at--681--6371NONE
GATCCGGCGGCGAGATACTGAACGT
NONE
Target Sequence 
AGGACAATATCTAGGTGCTCTGCAGAGGACACAGGTACCCAGTGGCTCTCCTTCCCGTCTCGCCGACACGGCGCAACGAC
GGCGGGGTGCGGCAGAGACGGCCGTCCCTCCCCCTCCCTCCCTCTCCCTCTCCCCGTCGGCCTCGACGGTGACGGCGCCC
TCTCAACGGCGGCGTCGACGGCAACGACAGCGTCGGCGTCGTCTGAGGGTGGATCCGTCGGCGGTGGCGGCCACCGCGGG
CGGATCCGGCGGCGAGATACTGAACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30685.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis