Browse Element(s) Details


OsAffx.30694.1.S1_at

Description tigr:9638.m03285
TID=OsAffx.30694.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3683011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36780Os.46474.2.S1_x_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36780Os.46474.1.S1_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36800Os.20602.2.S1_x_at11/1110+19370747..19372927hAT family dimerisation domain containing protein
LOC_Os10g36810Os.46787.1.S1_at11/1110+19374212..19383870Plus-3 domain containing protein, expressed
LOC_Os10g36830OsAffx.30694.1.S1_at11/1110+19386195..19390452hypothetical protein
LOC_Os10g36839NANA10+19393048..19393293NA
LOC_Os10g36848Os.9727.1.S1_at11/1110+19398602..19405331Cytochrome P450 84A1, putative, expressed
LOC_Os10g36848OsAffx.28081.1.S1_x_at1/1110+19398602..19405331Cytochrome P450 84A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30694.1.S1_at--53--1451Chr10:19389864..19389888 (25 bp)
AGAACGACGTAGTCGCGGCCGACGA
LOC_Os10g36830
OsAffx.30694.1.S1_at--103--5791Chr10:19389844..19389868 (25 bp)
GACGAGCTGATCAAGGCCACCGGCT
LOC_Os10g36830
OsAffx.30694.1.S1_at--868--5071Chr10:19389762..19389786 (25 bp)
GCAGCCGCACCAAGGATTACCGGAA
LOC_Os10g36830
OsAffx.30694.1.S1_at--216--8751Chr10:19389726..19389750 (25 bp)
TGTACATGCTCCTCTCGGCGTGCGT
LOC_Os10g36830
OsAffx.30694.1.S1_at--1027--5291Chr10:19389679..19389703 (25 bp)
GAAGGCATGGGCTCGCCTCGCATCA
LOC_Os10g36830
OsAffx.30694.1.S1_at--1149--2111Chr10:19389607..19389631 (25 bp)
ACATGGCTCGACGTCAAGTGGATCA
LOC_Os10g36830
OsAffx.30694.1.S1_at--728--4871Chr10:19388882..19388906 (25 bp)
GCTATCGAGATAATGGTTGCTTGCT
LOC_Os10g36830
OsAffx.30694.1.S1_at--1153--6651Chr10:19388867..19388891 (25 bp)
GTTGCTTGCTCTGCTATGGCTGCAG
LOC_Os10g36830
OsAffx.30694.1.S1_at--527--5411Chr10:19388818..19388842 (25 bp)
GAAGCGAGTCACCAAGAAGCAGATG
LOC_Os10g36830
OsAffx.30694.1.S1_at--64--5251Chr10:19388773..19388797 (25 bp)
GAATCATCGGCGCAGCCGCCTTGAC
LOC_Os10g36830
OsAffx.30694.1.S1_at--382--3971Chr10:19388749..19388773 (25 bp)
CGGGAGGAACGCTGATGGCCATCTC
LOC_Os10g36830
Target Sequence 
AGAACGACGTAGTCGCGGCCGACGAGCTGATCAAGGCCACCGGCTCCGGGGGGGACGGCGACGAAGGGTGGCCGTGGCTG
GCGTCGGCGTCGTCGGCCGGCGGCAGCCGCACCAAGGATTACCGGAAGATGGCGGTGCTGTACATGCTCCTCTCGGCGTG
CGTCGCCGACGTGAACATGGCGGAGGAAGGCATGGGCTCGCCTCGCATCAGGAGGGGCTACGACGCCCGCCACCGCGTCG
CGCTCCGGCTGCTCGCGACATGGCTCGACGTCAAGTGGATCAAGATGGAAGCTATCGAGATAATGGTTGCTTGCTCTGCT
ATGGCTGCAGCGAGAGAGGAAGAACAGTCAGAAGGAAGCGAGTCACCAAGAAGCAGATGGGAGAACTGGAAGCGTGGAGG
AATCATCGGCGCAGCCGCCTTGACGGGAGGAACGCTGATGGCCATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis