Browse Element(s) Details


OsAffx.30707.1.S1_at

Description gb:NM_197421.1
DB_XREF= gi:37536201
TID=OsAffx.30707.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative membrane protein (OSJNBa0096G08.9), mRNA.
PROD=putative membrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3792011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37880Os.12222.1.S1_a_at11/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37880Os.47280.1.S1_x_at2/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37899Os.14049.1.S1_at11/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37899Os.52772.1.S1_at1/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37920OsAffx.30707.1.S1_at11/1110+19977688..19979307MATE efflux family protein, expressed
LOC_Os10g37940OsAffx.45.1.S1_at11/1110+19990396..19996007retrotransposon protein, putative, unclassified
LOC_Os10g37950OsAffx.20188.1.S1_at11/1110+19997687..19998864hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30707.1.S1_at--942--1871Chr10:19978711..19978735 (25 bp)
ACGAGGGTCAGCAACGAGCTCGGCG
LOC_Os10g37920
OsAffx.30707.1.S1_at--753--4571Chr10:19978876..19978900 (25 bp)
GCGCTCACGGCATCGGTGCTGCCGA
LOC_Os10g37920
OsAffx.30707.1.S1_at--967--1931Chr10:19978882..19978906 (25 bp)
ACGGCATCGGTGCTGCCGATCCTCG
LOC_Os10g37920
OsAffx.30707.1.S1_at--637--10591Chr10:19979044..19979068 (25 bp)
TTCTGGGCGGGCATGGACTTCAGGG
LOC_Os10g37920
OsAffx.30707.1.S1_at--1128--9331Chr10:19979108..19979132 (25 bp)
TCGCGGTGATGCTCGTCGTGATCCA
LOC_Os10g37920
OsAffx.30707.1.S1_at--377--7391Chr10:19979113..19979137 (25 bp)
GTGATGCTCGTCGTGATCCAGCGCA
LOC_Os10g37920
OsAffx.30707.1.S1_at--17--3391Chr10:19979131..19979155 (25 bp)
CAGCGCACGGACTGGGACGTACAAG
LOC_Os10g37920
OsAffx.30707.1.S1_at--699--1951Chr10:19979141..19979165 (25 bp)
ACTGGGACGTACAAGCCAAGCTCGC
LOC_Os10g37920
OsAffx.30707.1.S1_at--846--7031Chr10:19979149..19979173 (25 bp)
GTACAAGCCAAGCTCGCGCAGGTGC
LOC_Os10g37920
OsAffx.30707.1.S1_at--148--9711Chr10:19979210..19979234 (25 bp)
TCAACGAAGCCGGTGGGAATGACGC
LOC_Os10g37920
OsAffx.30707.1.S1_at--878--1831Chr10:19979231..19979255 (25 bp)
ACGCGGTCGCGCACGTCAAGGTCGC
LOC_Os10g37920
Target Sequence 
ACGAGGGTCAGCAACGAGCTCGGCGCGAACCGGCCGTCCGCCGCGCGCGCCGCGGCGAGGGCGGGGCTCGCGCTGAGCGC
CGTCCAGGGCCTCGCCTCCCTCGCGTTCGCCGTGTCCGTGCGCGGCGCGTGGGCGCGCATGTTCACGCCGGACGCCGACA
TCCTCGCGCTCACGGCATCGGTGCTGCCGATCCTCGGCCTCTGCGAGCTCGGCAACTGCCCGCAGACCACCGGCTGCGGC
GTGCTCCGGGGCAGCGCGCGGCCGAGAGACGGCGCCCACATCAACCTCGGCGCGTTCTACGGCGTCGGCACGCCGGTCGC
CGTCGGGCTCGCGTTCTGGGCGGGCATGGACTTCAGGGGGCTCTGGCTCGGCCTCCTCGCCGCGCAGGCGGCGTGCGTCG
CGGTGATGCTCGTCGTGATCCAGCGCACGGACTGGGACGTACAAGCCAAGCTCGCGCAGGTGCTCGCCGGCGCCGCGGCC
AGTGGCGGCGACCACGGCGTCAACGAAGCCGGTGGGAATGACGCGGTCGCGCACGTCAAGGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis