Browse Element(s) Details


OsAffx.30775.1.S1_at

Description tigr:9639.m00097
TID=OsAffx.30775.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0195011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01900OsAffx.30774.1.S1_s_at11/1111+487827..488893hypothetical protein
LOC_Os11g01910NANA11+489197..489939hypothetical protein
LOC_Os11g01920NANA11+492407..498499retrotransposon protein, putative, unclassified
LOC_Os11g01930NANA11+499177..501200retrotransposon protein, putative, unclassified
LOC_Os11g01950OsAffx.30775.1.S1_at11/1111+512297..512948hypothetical protein
LOC_Os11g01960Os.38751.1.A1_at10/1111+513988..515571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g01960OsAffx.8338.1.S1_x_at1/1111+513988..515571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g01960OsAffx.916.1.S1_x_at1/1111+513988..515571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g01970Os.46012.2.S1_x_at10/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01970Os.46012.3.S1_x_at8/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01970Os.27088.1.A1_x_at6/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01970Os.54691.1.S1_x_at1/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01980NANA11+524467..525275hypothetical protein
LOC_Os11g01990NANA11+530016..531080expressed protein
LOC_Os11g02000Os.57376.1.S1_s_at11/1111+532001..534129expressed protein
LOC_Os11g02010Os.56115.1.S1_at10/1111+536011..537453transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30775.1.S1_at--329--551Chr11:512442..512878 (25 bp)
ATCCCGGTGCGCGTGAAAGGCTGCA
LOC_Os11g01950
OsAffx.30775.1.S1_at--1064--7291Chr11:512860..512884 (25 bp)
GTGCGCGTGAAAGGCTGCAGCTGCA
LOC_Os11g01950
OsAffx.30775.1.S1_at--92--9051Chr11:512875..512899 (25 bp)
TGCAGCTGCACGGTATGGAGATTCC
LOC_Os11g01950
OsAffx.30775.1.S1_at--214--5071Chr11:512876..512900 (25 bp)
GCAGCTGCACGGTATGGAGATTCCA
LOC_Os11g01950
OsAffx.30775.1.S1_at--718--3391Chr11:512877..512901 (25 bp)
CAGCTGCACGGTATGGAGATTCCAA
LOC_Os11g01950
OsAffx.30775.1.S1_at--1117--1591Chr11:512878..512902 (25 bp)
AGCTGCACGGTATGGAGATTCCAAG
LOC_Os11g01950
OsAffx.30775.1.S1_at--1033--9011Chr11:512881..512905 (25 bp)
TGCACGGTATGGAGATTCCAAGCAT
LOC_Os11g01950
OsAffx.30775.1.S1_at--114--1932Chr11:512884..512908 (25 bp)
ACGGTATGGAGATTCCAAGCATGAC
LOC_Os11g01950
OsAffx.30775.1.S1_at--424--10111Chr11:512888..512912 (25 bp)
TATGGAGATTCCAAGCATGACGGAA
LOC_Os11g01950
OsAffx.30775.1.S1_at--433--7991Chr11:512891..512915 (25 bp)
GGAGATTCCAAGCATGACGGAAGTT
LOC_Os11g01950
OsAffx.30775.1.S1_at--893--6571Chr11:512894..512918 (25 bp)
GATTCCAAGCATGACGGAAGTTGGA
LOC_Os11g01950
Target Sequence 
ATCCCGGTGCGCGTGAAAGGCTGCAGCTGCACGGTATGGAGATTCCAAGCATGACGGAAGTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis