Browse Element(s) Details


OsAffx.30795.2.S1_at

Description tigr:9639.m00243
TID=OsAffx.30795.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0336011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03310OsAffx.31559.2.S1_at11/1111+1240174..1241368No apical meristem protein
LOC_Os11g03320Os.25164.1.A1_at8/1111+1245705..1247228hypothetical protein
LOC_Os11g03330NANA11+1249529..1252981transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03340Os.46692.1.S1_at5/1111+1253749..1255915hypothetical protein
LOC_Os11g03360OsAffx.30795.2.S1_at11/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.23640.3.S1_x_at6/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.30795.1.S1_x_at5/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.30795.3.S1_at4/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.23640.1.S1_x_at1/1111+1260957..1266500hypothetical protein
LOC_Os11g03370Os.35343.1.A1_at11/1111+1268315..1270180NAC-domain containing protein 21/22, putative, expressed
LOC_Os11g03380Os.11848.1.S1_at11/1111+1273459..1278085expressed protein
LOC_Os11g03380OsAffx.7454.1.S1_at1/1111+1273459..1278085expressed protein
LOC_Os11g03390Os.8564.1.S1_at11/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03390Os.10524.1.S1_x_at2/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03400Os.9193.1.S1_s_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03400Os.9193.1.S1_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03410Os.15794.1.S1_at5/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g03410Os.35323.1.S1_at1/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30795.2.S1_at--676--1631Chr11:1261685..1261709 (25 bp)
AGCGTCACGGGTTAGTCCCGCTCGG
LOC_Os11g03360
OsAffx.30795.2.S1_at--924--7551Chr11:1261650..1261674 (25 bp)
GGGCGTTACAAGGTGCAAGTGCACA
LOC_Os11g03360
OsAffx.30795.2.S1_at--838--8771Chr11:1261175..1261199 (25 bp)
TGTTTCCGCAGCTCCATTGACGCCA
LOC_Os11g03360
OsAffx.30795.2.S1_at--499--9071Chr11:1261143..1261167 (25 bp)
TGCTTCAGCACTCTCGTGGCTGCAT
LOC_Os11g03360
OsAffx.30795.2.S1_at--164--551Chr11:1261120..1261144 (25 bp)
ATCCGCTGCTTGTGGCAGACAGTTG
LOC_Os11g03360
OsAffx.30795.2.S1_at--87--1411Chr11:1261104..1261128 (25 bp)
AGACAGTTGTCTCCGGTGCCACTCA
LOC_Os11g03360
OsAffx.30795.2.S1_at--842--3311Chr11:1261067..1261091 (25 bp)
GCCGTTACCGTAGACGTCGTGGTCA
LOC_Os11g03360
OsAffx.30795.2.S1_at--92--9691Chr11:1261045..1261069 (25 bp)
TCACCGCTACTATTCCTAGGGTTTT
LOC_Os11g03360
OsAffx.30795.2.S1_at--315--10811Chr11:1261022..1261046 (25 bp)
TTGGGAAGGGCATCCAACGTCGAGA
LOC_Os11g03360
OsAffx.30795.2.S1_at--637--9211Chr11:1261010..1261034 (25 bp)
TCCAACGTCGAGACAAAGTGGTGGC
LOC_Os11g03360
OsAffx.30795.2.S1_at--606--8471Chr11:1260989..1261013 (25 bp)
TGGCTTGGGTCAGGTTTAGTTGAAC
LOC_Os11g03360
Target Sequence 
AGCGTCACGGGTTAGTCCCGCTCGGGGCTACTTCGGGGCGTTACAAGGTGCAAGTGCACAAAGTGAAGAGAGATTCAAAT
AGGATAGCTCATATGTTAGCTCAGATGGTTATGACCTCAGGAGTTGAAGCGGAGTGGAGTGTCGATGCCACCTGTTTCCG
CAGCTCCATTGACGCCACACTCGCTGCTTCAGCACTCTCGTGGCTGCATCCGCTGCTTGTGGCAGACAGTTGTCTCCGGT
GCCACTCACCATCGGTCGTCGCCGTTACCGTAGACGTCGTGGTCACCGCTACTATTCCTAGGGTTTTGGGAAGGGCATCC
AACGTCGAGACAAAGTGGTGGCTTGGGTCAGGTTTAGTTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30795.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis