Browse Element(s) Details


OsAffx.30805.1.S1_at

Description tigr:9639.m00302
TID=OsAffx.30805.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0393010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03870OsAffx.18656.1.S1_at11/1111+1542513..1542918hypothetical protein
LOC_Os11g03880OsAffx.31567.1.S1_at11/1111+1545093..1547579D-mannose binding lectin family protein
LOC_Os11g03890Os.22510.1.A1_at9/1111+1550992..1553325heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os11g03900Os.18609.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03900Os.50822.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03910Os.24473.1.A1_s_at11/1111+1561203..1564094zinc finger family protein, putative, expressed
LOC_Os11g03920OsAffx.18657.3.S1_s_at11/1111+1564342..1565323expressed protein
LOC_Os11g03930OsAffx.30805.1.S1_at10/1111+1566814..1568278hypothetical protein
LOC_Os11g03940OsAffx.19542.3.S1_x_at7/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03940OsAffx.7477.1.S1_at3/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03940OsAffx.9949.1.S1_at1/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03950Os.47463.1.S1_x_at6/1111+1588877..1591084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03950Os.14491.2.S1_x_at4/1111+1588877..1591084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03960OsAffx.13097.1.S1_s_at11/1111+1591314..1599431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03960Os.27037.1.A1_at1/1111+1591314..1599431transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30805.1.S1_at--398--2671Chr11:1566875..1566899 (25 bp)
AAGGACCGCAAGATTCTGGGAAGAC
LOC_Os11g03930
OsAffx.30805.1.S1_at--993--10591Chr11:1566888..1566912 (25 bp)
TTCTGGGAAGACAAAGCTCATTTCA
LOC_Os11g03930
OsAffx.30805.1.S1_at--204--4831Chr11:1566903..1566927 (25 bp)
GCTCATTTCAGCTATATTGGCGTCA
LOC_Os11g03930
OsAffx.30805.1.S1_at--1051--7071Chr11:1566924..1566948 (25 bp)
GTCAATTGGACATACATTACGCTGT
LOC_Os11g03930
OsAffx.30805.1.S1_at--1139--131Chr11:1566939..1566963 (25 bp)
ATTACGCTGTGTTGTGTATGCACCA
LOC_Os11g03930
OsAffx.30805.1.S1_at--675--7431Chr11:1566952..1566976 (25 bp)
GTGTATGCACCATCAGCGTCTGATA
LOC_Os11g03930
OsAffx.30805.1.S1_at--1016--4631Chr11:1566967..1566991 (25 bp)
GCGTCTGATATTGTTGGTATCCTCA
LOC_Os11g03930
OsAffx.30805.1.S1_at--52--2351Chr11:1566999..1567023 (25 bp)
AAAGAATCTGAACATGTCACATGAC
LOC_Os11g03930
OsAffx.30805.1.S1_at--856--3191Chr11:1567453..1567477 (25 bp)
CAAGTGGAAACTATACTATTGCTGA
LOC_Os11g03930
OsAffx.30805.1.S1_at--408--3691NONE
CTATTGCTGAAAAGTCCTGGTATCT
NONE
OsAffx.30805.1.S1_at--1047--2431Chr11:1567740..1567761 (22 bp)
AAAAGTCCTGGTATCTTGCTGGAGA
LOC_Os11g03930
Target Sequence 
AAGGACCGCAAGATTCTGGGAAGACAAAGCTCATTTCAGCTATATTGGCGTCAATTGGACATACATTACGCTGTGTTGTG
TATGCACCATCAGCGTCTGATATTGTTGGTATCCTCAATGAGACAAAGAATCTGAACATGTCACATGACCAATACAAACA
GTTCAGAAACTTAGATGATTCAAGTGGAAACTATACTATTGCTGAAAAGTCCTGGTATCTTGCTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis