Browse Element(s) Details


OsAffx.30810.1.S1_s_at

Description tigr:9640.m00321
TID=OsAffx.30810.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0406011/11transcription initiation factor IIE, putative, expressed
LOC_Os11g042301/11transcription initiation factor IIE, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04040NANA12+1696203..1699494retrotransposon protein, putative, unclassified
LOC_Os12g04050NANA12+1700122..1705935retrotransposon protein, putative, unclassified
LOC_Os12g04060OsAffx.30810.1.S1_s_at11/1112+1707508..1710344transcription initiation factor IIE, putative, expressed
LOC_Os12g04070OsAffx.31571.1.S1_at11/1112+1711516..1711776hypothetical protein
LOC_Os12g04080Os.56203.1.S1_at11/1112+1712134..1713663Transferase family protein, expressed
LOC_Os12g04090OsAffx.30811.1.S1_at10/1112+1714125..1714743Zinc finger, C3HC4 type family protein
LOC_Os12g04100Os.54318.1.S1_at2/1112+1715190..1716740Cytochrome P450 family protein
LOC_Os12g04110Os.6654.1.S1_at11/1112+1718705..1725257Cytochrome P450 family protein
LOC_Os12g04110OsAffx.24379.1.S1_at1/1112+1718705..1725257Cytochrome P450 family protein
LOC_Os12g04120OsAffx.31572.1.S1_at8/1112+1726835..1729563phosphoglycerate mutase family protein
LOC_Os12g04130OsAffx.30812.1.S1_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.1.S1_x_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130Os.56229.1.S1_at5/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.2.S1_x_at1/1112+1731267..1733980Kelch motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0005673cellular_componenttranscription factor TFIIE complex
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30810.1.S1_s_at--416--6612Chr12:1709230..1709254 (25 bp)
GTTGGGTGCCAAATCAAAACGTGAT
LOC_Os12g04060
OsAffx.30810.1.S1_s_at--735--7571Chr12:1709974..1709998 (25 bp)
GGGCTGAAGACTTGCTACTTCCTTA
LOC_Os12g04060
OsAffx.30810.1.S1_s_at--542--5651Chr12:1710036..1710060 (25 bp)
GACAGTAGGACTGATGGCTCCAAGT
LOC_Os12g04060
OsAffx.30810.1.S1_s_at--1003--851Chr12:1710049..1710073 (25 bp)
ATGGCTCCAAGTTTGATACATCATC
LOC_Os12g04060
OsAffx.30810.1.S1_s_at--792--6471Chr12:1710063..1710087 (25 bp)
GATACATCATCACCAATTGAGTGGG
LOC_Os12g04060
OsAffx.30810.1.S1_s_at--639--10011Chr12:1710111..1710135 (25 bp)
TAGCATAGTATTCCTGCACTGCGCA
LOC_Os12g04060
OsAffx.30810.1.S1_s_at--986--3311Chr12:1710127..1710151 (25 bp)
CACTGCGCATGAAACTAGTTTGACT
LOC_Os12g04060
OsAffx.30810.1.S1_s_at--581--5351Chr12:1710162..1710186 (25 bp)
GAAGATGCATTCTGCCATACTACAT
LOC_Os12g04060
OsAffx.30810.1.S1_s_at--653--6031Chr12:1710233..1710257 (25 bp)
GAGATGTATATCCTGCTAAAGTAGT
LOC_Os12g04060
OsAffx.30810.1.S1_s_at--515--3091Chr12:1710260..1710284 (25 bp)
AATACTACAGTTGCTGATGATCAAT
LOC_Os12g04060
OsAffx.30810.1.S1_s_at--471--5731Chr12:1710296..1710320 (25 bp)
GACTGTACTAAACTTTGCTTGTGCA
LOC_Os12g04060
Target Sequence 
GTTGGGTGCCAAATCAAAACGTGATGATGGTGGTGANTCTGGTGATGATGGCATTGAANTGAAAGTGNNGCAANCAACAG
GNAATATAGNAGAGGTATATAAGTTNGCTGATCTGNATGTGGAGACCCAAGAANNNNTNGANNANNANNNTNNNNNTNNT
NNTGNNTNGGTAGAGGGCTGAAGACTTGCTACTTCCTTAATGTAGAATGTGCTAAGGTTCAAGTTTGAAACACTAGGACA
GTAGGACTGATGGCTCCAAGTTTGATACATCATCACCAATTGAGTGGGAAGTGCAAAATGTGTGGAAGGTTTAGCATAGT
ATTCCTGCACTGCGCATGAAACTAGTTTGACTAGAATCAAGTGAAGATGCATTCTGCCATACTACATTTTCCATTTCAAG
CTTTTGGAGATTTTTGAGAAACAAAAGCATTTTGAGATGTATATCCTGCTAAAGTAGTAAAATACTACAGTTGCTGATGA
TCAATATTGAATGATAGACTGTACTAAACTTTGCTTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30810.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis