Browse Element(s) Details


OsAffx.30811.1.S1_at

Description tigr:9640.m00324
TID=OsAffx.30811.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0409010/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04040NANA12+1696203..1699494retrotransposon protein, putative, unclassified
LOC_Os12g04050NANA12+1700122..1705935retrotransposon protein, putative, unclassified
LOC_Os12g04060OsAffx.30810.1.S1_s_at11/1112+1707508..1710344transcription initiation factor IIE, putative, expressed
LOC_Os12g04070OsAffx.31571.1.S1_at11/1112+1711516..1711776hypothetical protein
LOC_Os12g04080Os.56203.1.S1_at11/1112+1712134..1713663Transferase family protein, expressed
LOC_Os12g04090OsAffx.30811.1.S1_at10/1112+1714125..1714743Zinc finger, C3HC4 type family protein
LOC_Os12g04100Os.54318.1.S1_at2/1112+1715190..1716740Cytochrome P450 family protein
LOC_Os12g04110Os.6654.1.S1_at11/1112+1718705..1725257Cytochrome P450 family protein
LOC_Os12g04110OsAffx.24379.1.S1_at1/1112+1718705..1725257Cytochrome P450 family protein
LOC_Os12g04120OsAffx.31572.1.S1_at8/1112+1726835..1729563phosphoglycerate mutase family protein
LOC_Os12g04130OsAffx.30812.1.S1_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.1.S1_x_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130Os.56229.1.S1_at5/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.2.S1_x_at1/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04140Os.50916.1.S1_at1/1112+1738759..1739846cell death associated protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30811.1.S1_at--235--10311Chr12:1714186..1714210 (25 bp)
TTTCTGATCCATACGCGGCAGAAAA
LOC_Os12g04090
OsAffx.30811.1.S1_at--706--571Chr12:1714192..1714216 (25 bp)
ATCCATACGCGGCAGAAAAATTCGA
LOC_Os12g04090
OsAffx.30811.1.S1_at--351--4691Chr12:1714200..1714224 (25 bp)
GCGGCAGAAAAATTCGAAGACCTAC
LOC_Os12g04090
OsAffx.30811.1.S1_at--282--8251Chr12:1714301..1714325 (25 bp)
GGCAGCGCGAGTTCCGATGAGATTC
LOC_Os12g04090
OsAffx.30811.1.S1_at--670--1651Chr12:1714304..1714328 (25 bp)
AGCGCGAGTTCCGATGAGATTCCAC
LOC_Os12g04090
OsAffx.30811.1.S1_at--426--611Chr12:1714386..1714410 (25 bp)
ATGCTACAAGAGTTCCGTCGAGGGG
LOC_Os12g04090
OsAffx.30811.1.S1_at--572--6971NONE
GTACCAGGGAGAGGACGACGTCGCC
NONE
OsAffx.30811.1.S1_at--804--6351Chr12:1714500..1714524 (25 bp)
GATGCCCCGATGCAAGATGTCGCGA
LOC_Os12g04090
OsAffx.30811.1.S1_at--301--4191Chr12:1714505..1714529 (25 bp)
CCCGATGCAAGATGTCGCGAGATGT
LOC_Os12g04090
OsAffx.30811.1.S1_at--768--10871Chr12:1714668..1714692 (25 bp)
TTGGCTCAGCGAAAGCTGCCTCTGT
LOC_Os12g04090
OsAffx.30811.1.S1_at--223--1651Chr12:1714675..1714699 (25 bp)
AGCGAAAGCTGCCTCTGTCCTCTCT
LOC_Os12g04090
Target Sequence 
TTTCTGATCCATACGCGGCAGAAAAATTCGAAGACCTACTCCGAGAATTGGGGGTCGACCCTAGTATCCACACTGTAGTC
CGTAGCGCCGGGAGATGGATGGATCCGGCAGCGGCGGCAGCGCGAGTTCCGATGAGATTCCACCGCACGCTCCAACGCCT
AGGAATCGACCCCAACAGCGATGCCCGGAGCATCCGCGACATGCTACAAGAGTTCCGTCGAGGGGTGTACCAGGGAGAGG
ACGACGTCGCCGCGCCGCCGACGGGGATGCCCCGATGCAAGATGTCGCGAGATGTCCTCCTGGGCCTCGCGCTGACGAAG
GCGTGCGACGCGAGGCAGGAGGAGTGCGCCGTGTGCCTCAGGGACTTCGAGGAGAAAGACATGCTGAGGACGATGCCGTG
TAACCACTCCTTCCACGAGATCTGCCTCTTCCGTTGGCTCAGCGAAAGCTGCCTCTGTCCTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis