Browse Element(s) Details


OsAffx.30827.1.S1_x_at

Description tigr:9639.m00450
TID=OsAffx.30827.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0535011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05310NANA11+2347198..2347443hypothetical protein
LOC_Os11g05320OsAffx.31595.1.S1_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed
LOC_Os11g05320OsAffx.31595.1.S1_x_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed
LOC_Os11g05330Os.18650.1.S1_at11/1111+2359741..2360341expressed protein
LOC_Os11g05340OsAffx.18686.1.S1_at10/1111+2360348..2367995transposon protein, putative, unclassified, expressed
LOC_Os11g05350OsAffx.30827.1.S1_x_at11/1111+2371868..2372341hypothetical protein
LOC_Os11g05360NANA11+2374998..2376272transposon protein, putative, unclassified
LOC_Os11g05370Os.45407.1.S1_s_at1/1111+2378587..237904760S ribosomal protein L26-1, putative, expressed
LOC_Os11g05380Os.14105.1.S1_at11/1111+2386354..2388224Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30827.1.S1_x_at--584--8691Chr11:2372169..2372193 (25 bp)
TGTCCCGTGCGGAATCGGCCGTGGA
LOC_Os11g05350
OsAffx.30827.1.S1_x_at--259--1331Chr11:2372127..2372151 (25 bp)
AGAGGCACCGCTTGATCGATCTCCT
LOC_Os11g05350
OsAffx.30827.1.S1_x_at--551--6411Chr11:2372110..2372134 (25 bp)
GATCTCCTCAAGATCGTTGAGTCGA
LOC_Os11g05350
OsAffx.30827.1.S1_x_at--4--9731Chr11:2372103..2372127 (25 bp)
TCAAGATCGTTGAGTCGAGGCTTGG
LOC_Os11g05350
OsAffx.30827.1.S1_x_at--81--8491Chr11:2372067..2372091 (25 bp)
TGGCGGACGCCGTCCGATCATGGCA
LOC_Os11g05350
OsAffx.30827.1.S1_x_at--582--7231Chr11:2372056..2372080 (25 bp)
GTCCGATCATGGCACGCGGCGGTGG
LOC_Os11g05350
OsAffx.30827.1.S1_x_at--376--9671Chr11:2372010..2372034 (25 bp)
TCACCCGCAACGAGGGCTTCGTCGG
LOC_Os11g05350
OsAffx.30827.1.S1_x_at--28--431Chr11:2371965..2371989 (25 bp)
ATCTTGAGGCCGACCTGTTCGGGAA
LOC_Os11g05350
OsAffx.30827.1.S1_x_at--594--8791Chr11:2371950..2371974 (25 bp)
TGTTCGGGAAGAGACCGATGCATCT
LOC_Os11g05350
OsAffx.30827.1.S1_x_at--379--1791Chr11:2371937..2371961 (25 bp)
ACCGATGCATCTGGTCGAGGTAGAG
LOC_Os11g05350
OsAffx.30827.1.S1_x_at--215--4491Chr11:2371898..2371922 (25 bp)
GCCGGCGTTCATGGACGGAAAAGAA
LOC_Os11g05350
Target Sequence 
TGTCCCGTGCGGAATCGGCCGTGGAGGTGGACGCTGCGAGCCAGAGGCACCGCTTGATCGATCTCCTCAAGATCGTTGAG
TCGAGGCTTGGGCGGCACGCGGTGGCGGACGCCGTCCGATCATGGCACGCGGCGGTGGCGGTGCGCCCGGAGCTTCCCTT
CACCCGCAACGAGGGCTTCGTCGGGAGGGAGAGCGAGCTGCTCGATCTTGAGGCCGACCTGTTCGGGAAGAGACCGATGC
ATCTGGTCGAGGTAGAGGTGTTCGGCGGCGAGCCGGCGTTCATGGACGGAAAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30827.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis