Browse Element(s) Details


OsAffx.3083.1.S1_at

Description tigr:9630.m05543
TID=OsAffx.3083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=calcineurin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g558809/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55840Os.49357.1.S1_at11/112+34176218..34178715expressed protein
LOC_Os02g55840Os.17702.2.S1_x_at1/112+34176218..34178715expressed protein
LOC_Os02g55850OsAffx.24887.1.S1_at11/112+34183635..34184018hypothetical protein
LOC_Os02g55860NANA2+34185762..34188116retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g55870Os.20580.1.S1_at11/112+34193672..34197835Heparanase-like protein 3 precursor, putative, expressed
LOC_Os02g55880OsAffx.3083.1.S1_at9/112+34201091..34203972EF hand family protein, expressed
LOC_Os02g55890Os.12069.1.S1_at11/112+34204555..34209016Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g55900OsAffx.3084.1.S1_at11/112+34210933..34214744hypothetical protein
LOC_Os02g55910Os.5288.1.S1_a_at11/112+34217788..34221579Monogalactosyldiacylglycerol synthase family protein, expressed
LOC_Os02g55920OsAffx.16572.2.S1_x_at11/112+34224092..34225627expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0019722biological_processcalcium-mediated signaling
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3083.1.S1_at--237--4651Chr02:34202445..34202469 (25 bp)
GCGGGACCAAACAGGGTCATTCATG
LOC_Os02g55880
OsAffx.3083.1.S1_at--1036--7691Chr02:34202432..34202456 (25 bp)
GGGTCATTCATGACAGAGGAACAAA
LOC_Os02g55880
OsAffx.3083.1.S1_at--563--2231Chr02:34201170..34201194 (25 bp)
AAATTTTGGCGATGTGCACCGGTTT
LOC_Os02g55880
OsAffx.3083.1.S1_at--489--7331Chr02:34201157..34201181 (25 bp)
GTGCACCGGTTTCACATGTTGAATT
LOC_Os02g55880
OsAffx.3083.1.S1_at--653--9011Chr02:34201138..34201162 (25 bp)
TGAATTGTGTTGATGCTTGATGTGC
LOC_Os02g55880
OsAffx.3083.1.S1_at--546--6651Chr02:34201130..34201154 (25 bp)
GTTGATGCTTGATGTGCACATCCCA
LOC_Os02g55880
OsAffx.3083.1.S1_at--826--8871Chr02:34201121..34201145 (25 bp)
TGATGTGCACATCCCAAGTCGTGAG
LOC_Os02g55880
OsAffx.3083.1.S1_at--1019--5111Chr02:34201115..34201139 (25 bp)
GCACATCCCAAGTCGTGAGATCAAA
LOC_Os02g55880
OsAffx.3083.1.S1_at--134--6052Chr01:5303431..5303455 (24 bp)
GAGATCAAATATGGATGGCTCAGAT
NONE
OsAffx.3083.1.S1_at--947--811Chr02:34201089..34201113 (25 bp)
ATGGATGGCTCAGATTAAGTATTAA
NONE
OsAffx.3083.1.S1_at--917--10493Chr12:4646146..4646657 (25 bp)
TTAATAGCCTAAGGCCTTGTTCGGT
NONE
Target Sequence 
GCGGGACCAAACAGGGTCATTCATGACAGAGGAACAAAGAGAGCGAGTAATAACAAATGTACTGGAAGAAGCTGGATACA
CAAGGGATTGCACGCTTTCTTTGGAAGATTTTACCAGGATTATAGATCATCCTGGCCTAAAGATGGAGGTGGAAGTGCCT
ATTGACTAGTGGCCCGTGCATACCTCTGGTTTTGGTTGCTGAACATAACTGTGCATAATCAATAGGACATGCAATGCAAC
AGAAGAACGGGCGTTCATCCTTCTGCTTTCTTCTGTACTGTAGTTCCACATGCCTCAACCCCAGTAGTTTGTTACGATGC
ATGACTGAATCTTTTGCTCATCTCGCCGTGAGCCTGTCAATGTAATTTAGTGGATCTTGTCCCCTATTGTAGAGACAAAA
ACTCCAAATTTTGGCGATGTGCACCGGTTTCACATGTTGAATTGTGTTGATGCTTGATGTGCACATCCCAAGTCGTGAGA
TCAAATATGGATGGCTCAGATTAAGTATTAATAGCCTAAGGCCTTGTTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis