Browse Element(s) Details


OsAffx.30832.1.S1_at

Description tigr:9639.m00487
TID=OsAffx.30832.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0571011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05690OsAffx.31606.1.S1_x_at11/1111+2592696..2598360Amino acid permease family protein, expressed
LOC_Os11g05700Os.6118.1.S1_at11/1111+2601649..2610012ABC transporter family protein, expressed
LOC_Os11g05710OsAffx.30832.1.S1_at11/1111+2614264..2616447hypothetical protein
LOC_Os11g05720NANA11+2616909..2619497retrotransposon protein, putative, unclassified
LOC_Os11g05730Os.37931.1.S1_at11/1111+2621575..2622185Histone H3, putative, expressed
LOC_Os11g05740Os.53019.1.S1_at11/1111+2627613..2629467B3 DNA binding domain containing protein, expressed
LOC_Os11g05750OsAffx.7007.1.S1_at11/1111+2633341..2635005hypothetical protein
LOC_Os11g05760Os.53800.1.S1_at11/1111+2636539..2642204Serine carboxypeptidase S28 family protein, expressed
LOC_Os11g05760Os.53962.1.S1_at1/1111+2636539..2642204Serine carboxypeptidase S28 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30832.1.S1_at--134--10091Chr11:2615915..2615939 (25 bp)
TAGGCTTTGCAGAACAGTCAACATT
LOC_Os11g05710
OsAffx.30832.1.S1_at--15--2071Chr11:2615935..2615959 (25 bp)
ACATTTGGTAAATCTAGGTCAGTAG
LOC_Os11g05710
OsAffx.30832.1.S1_at--43--6951Chr11:2615956..2615980 (25 bp)
GTAGTAAGTGTGACGCCTGAGTTGA
LOC_Os11g05710
OsAffx.30832.1.S1_at--291--7471Chr11:2615963..2615987 (25 bp)
GTGTGACGCCTGAGTTGATGCAGAA
LOC_Os11g05710
OsAffx.30832.1.S1_at--576--6012Chr11:2616026..2616050 (25 bp)
GAGAGATGGCTATGCAACTGCAAGT
LOC_Os11g05710
OsAffx.30832.1.S1_at--726--8191Chr11:2616054..2616078 (25 bp)
GGAAGACAATAGTTCTGGCATGAAG
LOC_Os11g05710
OsAffx.30832.1.S1_at--823--5491Chr11:2616166..2616190 (25 bp)
GAACAGGTAATTCAAGATCAGCTGA
LOC_Os11g05710
OsAffx.30832.1.S1_at--997--1111Chr11:2616277..2616301 (25 bp)
AGTGAAGATTTCCTAGACTCCCAGG
LOC_Os11g05710
OsAffx.30832.1.S1_at--1121--5711Chr11:2616292..2616316 (25 bp)
GACTCCCAGGAATCTGTGGATAGCT
LOC_Os11g05710
OsAffx.30832.1.S1_at--1019--8651Chr11:2616306..2616330 (25 bp)
TGTGGATAGCTTTGCCAGACAAGTT
LOC_Os11g05710
OsAffx.30832.1.S1_at--166--7851Chr11:2616333..2616357 (25 bp)
GGTACTGATCACTGAGGAAGATACT
LOC_Os11g05710
Target Sequence 
TAGGCTTTGCAGAACAGTCAACATTTGGTAAATCTAGGTCAGTAGTAAGTGTGACGCCTGAGTTGATGCAGAAGGAGGAA
CAAATGAAACAGCTGCAAATTCTGAAGGACAGAGAGATGGCTATGCAACTGCAAGTTGAGGAAGACAATAGTTCTGGCAT
GAAGAGAAAGCTGATAATGGATGTTGAGGGTAGTGATAAAGATGCTGGACAATTAGGAGAAGGTGTTGAAGACAAATTGC
TCAAGATTCAAGAACAGGTAATTCAAGATCAGCTGATGGGTGGGAAGAAAGTTGCTGTGGAGGTTAGCAAAAATGTCAAG
GAGATGAGTGAAGAAGACAAAGAAAAAGTGAATCTGGGAGATAGTGAAGATTTCCTAGACTCCCAGGAATCTGTGGATAG
CTTTGCCAGACAAGTTGGGGTACTGATCACTGAGGAAGATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis